View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_23 (Length: 233)
Name: NF17455_low_23
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_23 |
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| [»] scaffold0420 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: scaffold0420 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: scaffold0420
Description:
Target: scaffold0420; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 11896 - 11678
Alignment:
| Q |
13 |
gagaaatcaatataagtatgtactgctgaattgaaaattgcatgaaaactaaggttttggaatatatgtgtagtaatagcaaccggcaaagaaagtgaat |
112 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11896 |
gagaaatcaatataagtatgtacggctgaatcgaaaattgcatgaaaactaaggttttggaatatatgcgtagtaatagcaaccggcaaagaaagtgaat |
11797 |
T |
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| Q |
113 |
tataatagcacatggcagtagcaatatgaaataaagacatgaaatattaacgtaaagcacttaaataagaaacatataataatataattgcaaagggaat |
212 |
Q |
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| T |
11796 |
tagaatagcacatgacagtagcaatatgaaataaagacatgaaatattaacgtaaagcacttaaataagaaacatataataatataattgcaaagggaat |
11697 |
T |
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| Q |
213 |
tagaatgaaaagcaataac |
231 |
Q |
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||||||||||||||||||| |
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| T |
11696 |
tagaatgaaaagcaataac |
11678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0420; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 233
Target Start/End: Complemental strand, 11646 - 11615
Alignment:
| Q |
202 |
gcaaagggaattagaatgaaaagcaataacaa |
233 |
Q |
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| T |
11646 |
gcaaagggaattagaatgaaaagcaataacaa |
11615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 27807651 - 27807871
Alignment:
| Q |
13 |
gagaaatcaatataagtatgtactgctgaattgaaaattgcatgaaaactaaggttttggaatatatgtgtagtaatagcaaccggcaaagaaagtgaat |
112 |
Q |
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| T |
27807651 |
gagaaatcaatataagtatgtacggctgaattgaaaattgcatgaaaactaaggttttggaatatatgtgtagtaatagcaaccggcaaagaaagtgaat |
27807750 |
T |
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| Q |
113 |
tataatagcacatggcagtagcaatatgaaataaagacatgaaatattaacgtaaagcacttaaataagaaacatataataatataattgcaaagggaat |
212 |
Q |
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| T |
27807751 |
tagaatagcacatgacagtagcaatatgaaataaagacatgaaattttaacgtaaaacactaaaataagaaacatataataatataattgcaaagggaat |
27807850 |
T |
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| Q |
213 |
tagaatgaaaagcaataacaa |
233 |
Q |
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||||||||||||||||||||| |
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| T |
27807851 |
tagaatgaaaagcaataacaa |
27807871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 233
Target Start/End: Original strand, 27807901 - 27807932
Alignment:
| Q |
202 |
gcaaagggaattagaatgaaaagcaataacaa |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27807901 |
gcaaagggaattagaatgaaaagcaataacaa |
27807932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 22518030 - 22518251
Alignment:
| Q |
13 |
gagaaatcaatataagtatgtactgctgaattgaaaattgcatgaaaactaaggttttggaatatatgtgtagtaatagcaaccggcaaagaaagtgaat |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22518030 |
gagaaatcaatataagtatgtacggctgaattgaaaattgcataaaaactaaggtttcggaatatatgtgtagtaatagcaaccggcaaagaaagtgaat |
22518129 |
T |
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| Q |
113 |
tataatagcacatggcagtagcaatatgaaataaagacatgaaatattaacgtaaagca-cttaaataagaaacatataataatataattgcaaagggaa |
211 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22518130 |
tagaatagcacatgacagtagcaatatgaaataaagacatgaaatattaacgtaaagcaccttaaataagaaacatataataatataattgcaaagggaa |
22518229 |
T |
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| Q |
212 |
ttagaatgaaaagcaataacaa |
233 |
Q |
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|||| ||||||||||||||||| |
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| T |
22518230 |
ttaggatgaaaagcaataacaa |
22518251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 233
Target Start/End: Original strand, 22518281 - 22518312
Alignment:
| Q |
202 |
gcaaagggaattagaatgaaaagcaataacaa |
233 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
22518281 |
gcaaagggaattagaatgaaaagcaataacaa |
22518312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 27440064 - 27440010
Alignment:
| Q |
68 |
tttggaatatatgtgtagtaatagcaaccggcaaagaaagtgaattataatagca |
122 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| | ||||| ||||||| |
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| T |
27440064 |
tttggaatatatgtgtagtaatagcagccggaaaagaaactcaattagaatagca |
27440010 |
T |
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