View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_26 (Length: 215)
Name: NF17455_low_26
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 13311814 - 13311995
Alignment:
| Q |
14 |
atgaacagattgtgctatatataaacttaattaatagttaattttattagttgataaaatctataatggtttttgtttacttggtcacagactatttata |
113 |
Q |
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| T |
13311814 |
atgaacagattgtgctata----aacttaattaatagttaattttattagttgataaaatctataatggtttttgtttacttggtcacagactatttata |
13311909 |
T |
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| Q |
114 |
acttatcattctaattagttgtacttcattgtaaaaaatgtctaaatcaacgcttattatctattaaaaattgcttaccttgtttg |
199 |
Q |
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| T |
13311910 |
acttatcattctgattagttgtacttcattgtaaaaaatgtctaaatcaacgcttattatctattaaaaattgcttaccttgtttg |
13311995 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 13307876 - 13307974
Alignment:
| Q |
48 |
tagttaattttattagttgataaaatctataatggtttttgtttacttggtcacagactatttataacttatcattctaattagttgtacttcattgtaa |
147 |
Q |
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| T |
13307876 |
tagttcattttattagttgataaaatctatga-acattttgtttacttggtc-catgctactcataatttatcactcaaattagctgtacttcattgtaa |
13307973 |
T |
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