View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17455_low_28 (Length: 205)
Name: NF17455_low_28
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 14492914 - 14493087
Alignment:
| Q |
17 |
tgtgaataacttgatcgacaaaaccaaaatagacatcaccccaagaactcttgattgttaaaatgaaataaggaactagaacgcctgttgcaaaccccaa |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14492914 |
tgtgaataacttgatccacaaaaccaaaatagacatcaccccaagaactcttcattgttaaaatgaaataaggaactagaatgcctgttgcaaaccccaa |
14493013 |
T |
|
| Q |
117 |
accaagactcaagtaaaaccagttatcaaacaatccctcatcatttgtatcatcactactctgtctgttgtcac |
190 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14493014 |
accaagactcatgtaaaaccagttatcaaacaatccctcatcatttgtatcatcactactctgtctgttgtcac |
14493087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 14462057 - 14461895
Alignment:
| Q |
17 |
tgtgaataacttgatcgacaaaaccaaaatagacatcaccccaagaactcttgattgttaaaatgaaataaggaactagaacgcctgttgcaaaccccaa |
116 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14462057 |
tgtgaataacttgattgacaaaatcaaaatagacatcaccccaagaactcttcattgttaaaatgaaataaggaactagaatgcctgttgcaaaccccaa |
14461958 |
T |
|
| Q |
117 |
accaagactcaagtaaaaccagttatcaaacaatccctcatcatttgtatcatcactactctg |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
14461957 |
accaagactcaagtaaaaccagttatcaaacaattcctcatcatctgtattatcactactctg |
14461895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 14458437 - 14458319
Alignment:
| Q |
19 |
tgaataacttgatcgacaaaaccaaaatagacatcaccccaagaactcttgattgttaaaatgaaataaggaactagaacgcctgttgcaaaccccaaac |
118 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| |
|
|
| T |
14458437 |
tgaataacttgatcgacaaaatcaaagtagacatcaccccaagaactcttcattgttaaaatgataaaaggaactagaatgcctgatgcaaaccccaaac |
14458338 |
T |
|
| Q |
119 |
caagactcaagtaaaacca |
137 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14458337 |
caagactcaagtaaaacca |
14458319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 144
Target Start/End: Original strand, 14468529 - 14468632
Alignment:
| Q |
41 |
caaaatagacatcaccccaagaactcttgattgttaaaatgaaataaggaactagaacgcctgttgcaaaccccaaaccaagactcaagtaaaaccagtt |
140 |
Q |
| |
|
|||||||| |||||| ||| || ||||| |||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14468529 |
caaaataggcatcactccaggatctcttcattgctaaaacaaaataaggaactagagtgcctgttgcaaaccccaaaccaagactcaataaaaaccagtt |
14468628 |
T |
|
| Q |
141 |
atca |
144 |
Q |
| |
|
|||| |
|
|
| T |
14468629 |
atca |
14468632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 5237454 - 5237574
Alignment:
| Q |
17 |
tgtgaataacttgatcgacaaaaccaaaatagacatcaccccaagaactcttgattgttaaaatgaaataaggaactagaacgcctgttgcaaaccccaa |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
5237454 |
tgtgaataacttgatcgacaaaatcaaaatagacattaccccaagaactcttcattgttaaaatgaaataaggaaatagaatgcctgttgcaaaccccaa |
5237553 |
T |
|
| Q |
117 |
accaagactcaagtaaaacca |
137 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
5237554 |
accaagactcaactaaaacca |
5237574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University