View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17455_low_3 (Length: 551)

Name: NF17455_low_3
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17455_low_3
NF17455_low_3
[»] chr4 (6 HSPs)
chr4 (73-537)||(20918070-20918535)
chr4 (476-533)||(42639233-42639290)
chr4 (471-527)||(29398836-29398892)
chr4 (306-357)||(55007927-55007978)
chr4 (306-382)||(20863795-20863871)
chr4 (319-387)||(21945701-21945769)
[»] chr1 (7 HSPs)
chr1 (430-533)||(2544611-2544714)
chr1 (429-526)||(32404692-32404789)
chr1 (430-527)||(35828717-35828814)
chr1 (473-533)||(27704022-27704082)
chr1 (430-533)||(40416383-40416486)
chr1 (431-533)||(48431574-48431676)
chr1 (457-533)||(43423731-43423807)
[»] chr2 (5 HSPs)
chr2 (430-525)||(3481161-3481256)
chr2 (320-533)||(43752011-43752217)
chr2 (258-366)||(32364923-32365031)
chr2 (430-533)||(12141556-12141659)
chr2 (430-507)||(26850273-26850350)
[»] chr5 (6 HSPs)
chr5 (457-533)||(79525-79601)
chr5 (430-533)||(43475252-43475355)
chr5 (317-383)||(43035136-43035202)
chr5 (476-533)||(6889005-6889062)
chr5 (465-533)||(28676607-28676675)
chr5 (457-533)||(37124579-37124655)
[»] chr7 (7 HSPs)
chr7 (431-533)||(47848686-47848788)
chr7 (306-533)||(26741944-26742166)
chr7 (457-527)||(12966040-12966110)
chr7 (432-533)||(35713707-35713808)
chr7 (430-527)||(38135380-38135476)
chr7 (317-357)||(5418247-5418287)
chr7 (471-527)||(36101973-36102029)
[»] chr8 (11 HSPs)
chr8 (302-383)||(29645190-29645271)
chr8 (476-538)||(35643814-35643876)
chr8 (306-383)||(35362700-35362777)
chr8 (449-532)||(30748470-30748553)
chr8 (419-533)||(32930973-32931087)
chr8 (303-357)||(41971837-41971891)
chr8 (430-507)||(43904832-43904909)
chr8 (493-533)||(13171879-13171919)
chr8 (457-533)||(17491815-17491891)
chr8 (438-526)||(29645056-29645144)
chr8 (306-366)||(44699638-44699698)
[»] chr3 (4 HSPs)
chr3 (430-533)||(42510183-42510284)
chr3 (306-357)||(40116388-40116439)
chr3 (472-533)||(50960842-50960903)
chr3 (477-533)||(41842725-41842781)
[»] chr6 (4 HSPs)
chr6 (431-533)||(24665822-24665925)
chr6 (306-367)||(4257469-4257531)
chr6 (430-527)||(14389335-14389431)
chr6 (306-357)||(6055821-6055872)
[»] scaffold0050 (1 HSPs)
scaffold0050 (442-533)||(45607-45698)
[»] scaffold0010 (1 HSPs)
scaffold0010 (306-357)||(160374-160425)


Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 73 - 537
Target Start/End: Complemental strand, 20918535 - 20918070
Alignment:
Q  73 cataacattgatcatagtttttcattttgtgaatttgttaaagtgaatcaagagaaaatggtctctaatgagaaaccaaaaagtatggcaattaaaatta 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20918535 cataacattgatcatagtttttcattttgtgaatttgttaaagtgaatcaagagaaaatggtctctaatgagaaaccaaaaagtatggcaattaaaatta 20918436  T
Q  173 ttcttgttcagagtttaaataaaagaaattttgctnnnnnnntgaattgataaaatcttctttcaagatttatggattctacaacaacaaaaaccaaacc 272  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20918435 ttcttgttcagagtttaaataaaagaaattttgctaaaaaaatgaattgataaaatcttctttcaagatttatggattctacaacaataaaaaccaaacc 20918336  T
Q  273 tttttctattaaatgaggtcgactatgaagattaaattacgtcgtaatgttctatcatacacaatatttc-ggtcaaactcattaagtttcaaatagttt 371  Q
    ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| | ||||||||| ||||| |||    
T  20918335 tttttctattaaatgagatcggctatgaagatcaaattacgtcgtaatgttctatcatacacaatatttttggtcaaatttattaagttttaaatatttt 20918236  T
Q  372 ttaatagtttctatgaactctgatatgttttattcgtcttcatatgtctctagttacatgactatccttcatctgaactactttgcttactaaataattt 471  Q
    |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20918235 ttaatagtttttatgaactctgatatgttttataagtcttcatatgtctctagttacatgactatccttcatttgaactactttgcttactaaataattt 20918136  T
Q  472 ataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactatgtgt 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20918135 ataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccgctatgtgt 20918070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 476 - 533
Target Start/End: Original strand, 42639233 - 42639290
Alignment:
Q  476 gtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||||||| |||| ||||||| |||||||| || |||||||||||||||| |||||    
T  42639233 gtcttctctctacatgtccaaaccacctaagcctggtttccaccatcttttctactat 42639290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 527
Target Start/End: Complemental strand, 29398892 - 29398836
Alignment:
Q  471 tataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttc 527  Q
    ||||||||||||||| ||||  |||||| || ||||||| |||||||||||||||||    
T  29398892 tataggtcttctctctacatgcccaaaccacataagcatattttccaccatcttttc 29398836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 55007978 - 55007927
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    |||||||||| ||||| ||||||||| || ||||||||||| ||||||||||    
T  55007978 aaattacgtcataatgatctatcataaaccatatttcggtccaactcattaa 55007927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 382
Target Start/End: Complemental strand, 20863871 - 20863795
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttc 382  Q
    |||||||| | |||| ||||||||| ||| ||||||||||| |||||||||| |  |||||  ||| ||||||||||    
T  20863871 aaattacgccataatattctatcattcaccatatttcggtccaactcattaaataccaaatcatttctaatagtttc 20863795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 21945701 - 21945769
Alignment:
Q  319 atgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttctatga 387  Q
    ||||||||||||| || ||||||| ||| |||||||||| || |||||  ||  |||||||||||||||    
T  21945701 atgttctatcataaaccatatttcagtccaactcattaatttccaaatctttcctaatagtttctatga 21945769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 430 - 533
Target Start/End: Complemental strand, 2544714 - 2544611
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttcca 529  Q
    |||||||||| ||||||| ||||| | ||||||| | ||| ||||||||||||||| |||| ||||||| |||||||  ||||||||||||||||||| |    
T  2544714 tgactatcctccatctgatctactctccttactatagaatctataggtcttctctctacatgtccaaaccacctaagtctgttttccaccatcttttcta 2544615  T
Q  530 ctat 533  Q
    ||||    
T  2544614 ctat 2544611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 526
Target Start/End: Original strand, 32404692 - 32404789
Alignment:
Q  429 atgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatctttt 526  Q
    ||||||||||| |||||   ||||| | ||||||| | ||| || |||||||||||| |||||||||||| |||||||| | ||||||||||||||||    
T  32404692 atgactatcctccatcttctctactctccttactatagaatctacaggtcttctctctacatatccaaaccacctaagcctattttccaccatctttt 32404789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 35828717 - 35828814
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttc 527  Q
    |||||||||| ||| ||| || || | ||||||| ||||| ||||||||||||||| |||  ||||||| |||||| | | |||||||||||||||||    
T  35828717 tgactatcctccatatgatcttctctccttactacataatctataggtcttctctctacacgtccaaaccacctaaccctattttccaccatcttttc 35828814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 473 - 533
Target Start/End: Complemental strand, 27704082 - 27704022
Alignment:
Q  473 taggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||||| |||| |||| ||||||| || ||||||||||||||||||||||||| |||||    
T  27704082 taggtcttttctctacatgtccaaaccacataagcatgttttccaccatcttttctactat 27704022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 533
Target Start/End: Complemental strand, 40416486 - 40416383
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttcca 529  Q
    |||||||||| ||||||| ||||| | ||||||| | ||| || || ||||||||| ||||  | |||| |||||||| |  |||||||||||||||| |    
T  40416486 tgactatcctgcatctgatctactctccttactacaaaatctacagttcttctctctacatgcctaaaccacctaagcctcgtttccaccatcttttcta 40416387  T
Q  530 ctat 533  Q
    ||||    
T  40416386 ctat 40416383  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 533
Target Start/End: Original strand, 48431574 - 48431676
Alignment:
Q  431 gactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccac 530  Q
    ||||||||| ||||||| | ||| |  |||||| | ||| || | |||||||||| ||||  |||||| |||||||| | ||||||||||||||||| ||    
T  48431574 gactatcctccatctgatcaactctctttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccaccatcttttctac 48431673  T
Q  531 tat 533  Q
    |||    
T  48431674 tat 48431676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 43423807 - 43423731
Alignment:
Q  457 cttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    ||||||| ||||| || | |||||||||| ||||  |||||| |||||||| |  |||||||||||||||| |||||    
T  43423807 cttactacataatctacaagtcttctctctacatggccaaaccacctaagcctagtttccaccatcttttctactat 43423731  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 525
Target Start/End: Complemental strand, 3481256 - 3481161
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttt 525  Q
    |||||||||| ||||||| ||||| | ||| ||| | ||| ||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||    
T  3481256 tgactatcctccatctgatctactctccttgctacagaatctataggtcttctctctacatgtccaaaccacctaagcctgttttccaccatcttt 3481161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 320 - 533
Target Start/End: Original strand, 43752011 - 43752217
Alignment:
Q  320 tgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttctatgaactctgatatgttttattcgtcttcatatgtc 419  Q
    ||||||||||||||| || |||||||| |||||||||| || |||||  ||  |||||||||||       ||||||  |||| |  |||||| |||| |    
T  43752011 tgttctatcatacaccatctttcggtccaactcattaatttccaaatctttcctaatagtttct-------ctgatagtttttctaggtcttcctatgcc 43752103  T
Q  420 tctagttacatgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccacc 519  Q
    || ||| |  ||| |||||| ||||||| ||||| | | ||||| ||||| ||||||||||||||| |||| ||||||  |||||||| | ||||| |||    
T  43752104 tccagtgatctgagtatcctccatctgatctactctccctactacataatctataggtcttctctctacatgtccaaatcacctaagcctattttctacc 43752203  T
Q  520 atcttttccactat 533  Q
    | |||||| |||||    
T  43752204 accttttctactat 43752217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 366
Target Start/End: Original strand, 32364923 - 32365031
Alignment:
Q  258 aacaaaaaccaaacctttttctattaaatgaggtcgactatgaagattaaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    ||||| |||||| |||||| ||||||| |||||||  |||    ||| |||||||  | |||||||||||||||||||||| | ||||| ||||||||||    
T  32364923 aacaacaaccaagccttttcctattaagtgaggtcagctacattgatcaaattacaccataatgttctatcatacacaatagtccggtccaactcattaa 32365022  T
Q  358 gtttcaaat 366  Q
     || |||||    
T  32365023 tttccaaat 32365031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 533
Target Start/End: Complemental strand, 12141659 - 12141556
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttcca 529  Q
    ||||||||||  |||||| ||||| | ||||||| | ||| || ||||||||| || || |  |||||| |||||||| | ||||||||||||||||| |    
T  12141659 tgactatcctcaatctgatctactctccttactagagaatctacaggtcttctttctacgtgcccaaaccacctaagcctcttttccaccatcttttcta 12141560  T
Q  530 ctat 533  Q
    ||||    
T  12141559 ctat 12141556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 507
Target Start/End: Complemental strand, 26850350 - 26850273
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagc 507  Q
    |||||||||| ||||||| ||| | | ||||||| ||||| ||||||||||||||| ||||  || ||| ||||||||    
T  26850350 tgactatcctccatctgatctagtctccttactacataatatataggtcttctctctacatggccgaaccacctaagc 26850273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 79601 - 79525
Alignment:
Q  457 cttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    ||||||| | ||| ||||||||||||||| |||| ||||||| ||||||  |||||||||||||||||||| |||||    
T  79601 cttactacagaatctataggtcttctctctacatgtccaaaccacctaattatgttttccaccatcttttctactat 79525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 533
Target Start/End: Complemental strand, 43475355 - 43475252
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttcca 529  Q
    |||||||||| ||||||| ||||| | ||||||| |  || || ||||||||||||   ||| |||||| |||||||| |  |||||||||||||||| |    
T  43475355 tgactatcctccatctgatctactctccttactacaacatctacaggtcttctctctgaatacccaaaccacctaagcctagtttccaccatcttttcta 43475256  T
Q  530 ctat 533  Q
    ||||    
T  43475255 ctat 43475252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 383
Target Start/End: Complemental strand, 43035202 - 43035136
Alignment:
Q  317 taatgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttct 383  Q
    |||||||||||||||||| ||||||||||| ||||||| || || |||||  ||  |||||||||||    
T  43035202 taatgttctatcatacaccatatttcggtccaactcataaatttccaaatttttcctaatagtttct 43035136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 533
Target Start/End: Complemental strand, 6889062 - 6889005
Alignment:
Q  476 gtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||||||| |||| ||||||| || ||||| | |||||||||||||||||| ||||    
T  6889062 gtcttctctctacatgtccaaaccacttaagcctattttccaccatcttttcctctat 6889005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 533
Target Start/End: Complemental strand, 28676675 - 28676607
Alignment:
Q  465 ataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||||| |||||||||||| ||||  | |||| |||||||  | ||||||||||||||||| |||||    
T  28676675 ataatttaaaggtcttctctctacatgccgaaaccacctaagactattttccaccatcttttctactat 28676607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 37124655 - 37124579
Alignment:
Q  457 cttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    ||||||| ||||| ||||||||||||||||||| |  ||||  || ||||| | ||||||| ||||||||| |||||    
T  37124655 cttactacataatatataggtcttctctcaacaaactcaaatgacttaagcctattttccatcatcttttcaactat 37124579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 533
Target Start/End: Complemental strand, 47848788 - 47848686
Alignment:
Q  431 gactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccac 530  Q
    ||||||||| ||||||| ||||| | |||| || | |||||| | |||||||||| ||||  |||||| |||||||| | ||||||||||||||||| ||    
T  47848788 gactatcctccatctgatctactctccttagtacagaatttacaagtcttctctcgacatgcccaaaccacctaagcctattttccaccatcttttctac 47848689  T
Q  531 tat 533  Q
    |||    
T  47848688 tat 47848686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 306 - 533
Target Start/End: Original strand, 26741944 - 26742166
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttctatgaactctgatatgttttatt 405  Q
    |||||||| | ||||||||||||||| || ||||||||||| |||||||| | || |||||| ||  |||||||||     | || |||||  |||| |     
T  26741944 aaattacgccataatgttctatcataaaccatatttcggtccaactcatttatttccaaatatttcctaatagttt-----atctttgatagtttttcta 26742038  T
Q  406 cgtcttcatatgtctctagttacatgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaa 505  Q
    ||||||| | || ||||||| |  ||||||| ||  |||||| ||||| | ||||| | | ||| |||||||| | |||| |||| | ||||| ||||||    
T  26742039 cgtcttcctctgcctctagtgatctgactattctctatctgatctactctccttaccacaaaatctataggtcgtttctctacatgttcaaaccacctaa 26742138  T
Q  506 gcatgttttccaccatcttttccactat 533  Q
     | | ||||||||||||||||| |||||    
T  26742139 tcctattttccaccatcttttctactat 26742166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 527
Target Start/End: Complemental strand, 12966110 - 12966040
Alignment:
Q  457 cttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttc 527  Q
    ||||||| | ||||||  ||||||||||| ||||  |||||| ||||||||||  ||||||||||||||||    
T  12966110 cttactacagaatttacgggtcttctctctacatgcccaaaccacctaagcatagtttccaccatcttttc 12966040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 533
Target Start/End: Complemental strand, 35713808 - 35713707
Alignment:
Q  432 actatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccact 531  Q
    |||| |||||||| || ||||| | ||||||| | ||| || | |||||||||| ||||  |||||| |||||||| | ||||||||||| ||||| |||    
T  35713808 actacccttcatcagatctactctccttactacaaaatgtacaagtcttctctctacatgcccaaaccacctaagcctattttccaccattttttcaact 35713709  T
Q  532 at 533  Q
    ||    
T  35713708 at 35713707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 38135380 - 38135476
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttc 527  Q
    |||||||||| ||||||| ||| | | ||||||| | ||| ||  |||||||| || |||| ||||||| |||||||| | |||||||||||||||||    
T  38135380 tgactatcctccatctgatcta-tctccttactacaaaatctactggtcttctgtctacatgtccaaaccacctaagcctattttccaccatcttttc 38135476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 357
Target Start/End: Complemental strand, 5418287 - 5418247
Alignment:
Q  317 taatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    ||||||||||||||| || ||||||||||| ||||||||||    
T  5418287 taatgttctatcataaaccatatttcggtccaactcattaa 5418247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 527
Target Start/End: Original strand, 36101973 - 36102029
Alignment:
Q  471 tataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttc 527  Q
    ||||||||||||||| ||||  |||||| |||||||| | ||||||| |||||||||    
T  36101973 tataggtcttctctctacatccccaaaccacctaagcctattttccaacatcttttc 36102029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 29645271 - 29645190
Alignment:
Q  302 gattaaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttct 383  Q
    |||||||||| |||||| | |||||||| |||  |||||||||||||||||||| | || |||||| ||| |||||||||||    
T  29645271 gattaaattatgtcgtagtattctatcacacatcatatttcggtcaaactcattgatttacaaatattttataatagtttct 29645190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 35643814 - 35643876
Alignment:
Q  476 gtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactatgtgtt 538  Q
    |||||||||| ||||  |||||| |||||||||| ||||||||||||||||| ||||| ||||    
T  35643814 gtcttctctctacatgcccaaaccacctaagcatattttccaccatcttttctactatatgtt 35643876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 35362700 - 35362777
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaagtttcaaatagtttttaatagtttct 383  Q
    |||||||| | |||||||||||||||||| ||||||| ||| |||||||||| || |||||  ||  |||||||||||    
T  35362700 aaattacgccataatgttctatcatacaccatatttcagtccaactcattaatttccaaatctttcctaatagtttct 35362777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 532
Target Start/End: Complemental strand, 30748553 - 30748470
Alignment:
Q  449 ctactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccacta 532  Q
    ||||||||||||||| | ||| || |||||||||||| ||||  |||||| |||||||| |   ||||||||||||||| ||||    
T  30748553 ctactttgcttactatagaatctacaggtcttctctctacatgcccaaaccacctaagccttgattccaccatcttttctacta 30748470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 533
Target Start/End: Complemental strand, 32931087 - 32930973
Alignment:
Q  419 ctctagttacatgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccac 518  Q
    ||||||| | ||||||||||| ||||||| ||| | | ||||||| | ||| ||||| | |||| || |||| ||||||  ||||||||||||||||  |    
T  32931087 ctctagtgatatgactatcctccatctgatctagtctccttactacagaatctatagattttctttctacatgtccaaatcacctaagcatgttttctgc 32930988  T
Q  519 catcttttccactat 533  Q
    || |||||| |||||    
T  32930987 caccttttctactat 32930973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 41971837 - 41971891
Alignment:
Q  303 attaaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    |||| |||| ||| ||||||||||||||| |||||||||| ||| ||||||||||    
T  41971837 attatattaagtcataatgttctatcataaacaatatttcagtccaactcattaa 41971891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 507
Target Start/End: Original strand, 43904832 - 43904909
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagc 507  Q
    |||||||||| ||||||| ||| | | ||||||| |  || ||||||||||||||| |||| ||||||| ||||||||    
T  43904832 tgactatcctccatctgatctattcttcttactacaacatctataggtcttctctctacatgtccaaaccacctaagc 43904909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 533
Target Start/End: Original strand, 13171879 - 13171919
Alignment:
Q  493 ccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||| |||||||||| ||||||||||||||||| |||||    
T  13171879 ccaaaccacctaagcatattttccaccatcttttctactat 13171919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 533
Target Start/End: Original strand, 17491815 - 17491891
Alignment:
Q  457 cttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    ||||||| | ||| ||||||||||||||| ||||| |||||| |||||||  | || |||||||| ||||| |||||    
T  17491815 cttactacaaaatgtataggtcttctctctacatacccaaaccacctaagtttattgtccaccatattttctactat 17491891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 526
Target Start/End: Complemental strand, 29645144 - 29645056
Alignment:
Q  438 cttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatctttt 526  Q
    |||||||||| ||||| | ||||||| | ||| ||||||||||||||  |||| ||||||| |  ||| | | ||||||||||||||||    
T  29645144 cttcatctgatctactgtccttactacaaaatctataggtcttctctttacatgtccaaaccaattaaacctattttccaccatctttt 29645056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 44699698 - 44699638
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaagtttcaaat 366  Q
    |||||||| | || ||||||||||| ||| ||||||||||| |||||||||| || |||||    
T  44699698 aaattacgccatagtgttctatcatgcaccatatttcggtctaactcattaatttccaaat 44699638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 533
Target Start/End: Original strand, 42510183 - 42510284
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttcca 529  Q
    |||||||||| ||||||| ||||| | ||||| | | ||| ||||||||||||||  |||| ||||||| |||||||| | |||||||| |||||||| |    
T  42510183 tgactatcctccatctgatctactctccttaccacaaaatctataggtcttctct--acatgtccaaaccacctaagcctattttccactatcttttcta 42510280  T
Q  530 ctat 533  Q
    ||||    
T  42510281 ctat 42510284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 40116388 - 40116439
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    |||||||| | ||||||||||||||| || ||||||||||| ||||||||||    
T  40116388 aaattacgccataatgttctatcataaaccatatttcggtccaactcattaa 40116439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 533
Target Start/End: Original strand, 50960842 - 50960903
Alignment:
Q  472 ataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||||||||||| ||||  |||||| |||||||| | ||||| ||||||||||| |||||    
T  50960842 ataggtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactat 50960903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 533
Target Start/End: Original strand, 41842725 - 41842781
Alignment:
Q  477 tcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    ||||||||| ||||| |||||| |||||||  || |||||||||||||||| |||||    
T  41842725 tcttctctctacatacccaaaccacctaagactggtttccaccatcttttctactat 41842781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 533
Target Start/End: Complemental strand, 24665925 - 24665822
Alignment:
Q  431 gactatccttcatctgaactactttgcttacta-aataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttcca 529  Q
    |||||| |||||||||| ||||| | ||||||| || ||| || |||||||||||| |||| ||||||| |||||||| | ||||| ||||| ||||| |    
T  24665925 gactatgcttcatctgatctactctccttactacaaaaatctacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattttcta 24665826  T
Q  530 ctat 533  Q
    ||||    
T  24665825 ctat 24665822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 4257531 - 4257469
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaata-tttcggtcaaactcattaagtttcaaata 367  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||||||||| || ||||||    
T  4257531 aaatcacgtcataatgttctatcatacaccatattttcggtcaaactcattaatttacaaata 4257469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 527
Target Start/End: Original strand, 14389335 - 14389431
Alignment:
Q  430 tgactatccttcatctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttc 527  Q
    |||||||||| ||||||| ||| | | ||||||| | | | ||||||||||||||| |||| ||||||| |||||||  || ||||||||||||||||    
T  14389335 tgactatcctccatctgatctattctccttactacaaagtctataggtcttctctctacatgtccaaaccacctaagtttg-tttccaccatcttttc 14389431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 6055821 - 6055872
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    |||||||||||||||||||||| |||||| |||||| | || ||||||||||    
T  6055821 aaattacgtcgtaatgttctattatacactatatttggatctaactcattaa 6055872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 533
Target Start/End: Original strand, 45607 - 45698
Alignment:
Q  442 atctgaactactttgcttactaaataatttataggtcttctctcaacatatccaaactacctaagcatgttttccaccatcttttccactat 533  Q
    |||||| ||||| | ||||||| | |||||||||   ||||||| |||| | ||||| ||||||| |||||||||||| ||||||| |||||    
T  45607 atctgatctactctccttactacaaaatttatagacattctctctacatgttcaaacaacctaagtatgttttccaccgtcttttctactat 45698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 160374 - 160425
Alignment:
Q  306 aaattacgtcgtaatgttctatcatacacaatatttcggtcaaactcattaa 357  Q
    |||||||| | ||||||||||||||| || ||||||||||| ||||||||||    
T  160374 aaattacgccataatgttctatcataaaccatatttcggtcgaactcattaa 160425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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