View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17455_low_6 (Length: 449)
Name: NF17455_low_6
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_6 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 118 - 433
Target Start/End: Complemental strand, 5907404 - 5907089
Alignment:
| Q |
118 |
cagctggcaagggaaagatcagccccgtagcgtattcaggtatttccgcaatcgcatattctaggccagtccaaggaacaagagtaggatgtcattgaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5907404 |
cagctggcaagggaaagatcagccccgtagcgtattcaggtatttccgcaatcgcatattctaggccagtccaaggaacaagagtaggatgtcattgaac |
5907305 |
T |
|
| Q |
218 |
ttgaataatccaaggagcttttaaaatgtgacttgtgattctgaaaagcctaataacactaaatttattaatagaatttgacattgatcccttggaatgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5907304 |
ttgaataatccaaggagcttttaaaatgtgacttgtgattctgaaaagcctaataacactaaatttattaatagaatttgacattgatcccttggaatgg |
5907205 |
T |
|
| Q |
318 |
ttgccggtgagagtaatgtcactttcaagcatagaaacaacacagtgcagacaaatgatttgatcctgaaaccttatttgatttctgcaggaccagatag |
417 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5907204 |
ttgccagtgagattaatgtcactttcaagcatagaaacaacacagtgcagacaaatgatttgatcctgaaaccttatttgatttccgcaggaccagatag |
5907105 |
T |
|
| Q |
418 |
ttgcgaaaattgaagt |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5907104 |
ttgcgaaaattgaagt |
5907089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 5903384 - 5903328
Alignment:
| Q |
286 |
taatagaatttgacattgatcccttggaatggttgccggtgagagtaatgtcacttt |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
5903384 |
taatagaatttgacattgatcccttggaatggttgccaatgagagcaatgtcacttt |
5903328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 272
Target Start/End: Complemental strand, 5903441 - 5903380
Alignment:
| Q |
211 |
attgaacttgaataatccaaggagcttttaaaatgtgacttgtgattctgaaaagcctaata |
272 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
5903441 |
attgaacttgaataatcttaggatctttcgaaatgtgacttgtgattttgaaaagcctaata |
5903380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 185
Target Start/End: Original strand, 16024 - 16198
Alignment:
| Q |
11 |
atgaatggaatggcattggcttatggggcactccctctggacggattaagataacagacctcatcccaaagcaaaggaagaaagaggctttctcacataa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16024 |
atgaatggaatggcattggcttatggggcactccctctggatggattaagataacaggcctcgtcccaaagcaaaggaagaaagaggcttgctcacataa |
16123 |
T |
|
| Q |
111 |
aatatcccagctggcaagggaaagatcagccccgtagcgtattcaggtatttccgcaatcgcatattctaggcca |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
16124 |
aatatcccagctggcaagggaaagatcagccccatagcgtattcaggtatatccgcaatcgcatattctgggcca |
16198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 35210266 - 35210423
Alignment:
| Q |
11 |
atgaatggaatggcattggcttatggggcactccctctggacggattaagataacagacctcatcccaaagcaaaggaagaaagaggctttctcacataa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35210266 |
atgaatggaatggcattggcttatggggcactccctctggatggattaagataacaggcctcgtcccaaagcaaaggaagaaagaggcttgctcacataa |
35210365 |
T |
|
| Q |
111 |
aatatcccagctggcaagggaaagatcagccccgtagcgtattcaggtatttccgcaa |
168 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
35210366 |
aatatcccagctggccagggaaagatcagccccatagcgtattcaggtatatccgcaa |
35210423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 94 - 177
Target Start/End: Original strand, 21946745 - 21946828
Alignment:
| Q |
94 |
gaggctttctcacataaaatatcccagctggcaagggaaagatcagccccgtagcgtattcaggtatttccgcaatcgcatatt |
177 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
21946745 |
gaggcttgctcacataaaatatcccagctggcaagggaaagatcagccccatagcgtattcaggtatatccgcaatcgcatatt |
21946828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University