View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_7 (Length: 406)
Name: NF17455_low_7
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 7276419 - 7276047
Alignment:
| Q |
15 |
gaacaatgtttagaacagcttgaacatttcaacatttttataagaattcattttttattcagaatctacacatcaacatggctttttgttttagaaaatt |
114 |
Q |
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| T |
7276419 |
gaacaatgtttagaacagcttgaacatttcaacatttttataagaattcattttttattcagaatctacacatcaacatggctttttgttttagaaattt |
7276320 |
T |
|
| Q |
115 |
gctatatatgactcagattagcaccaaaagttgcaaaatgatccttcaagggagacaataaagggattaatccaacccatttaggataaggctttgtgaa |
214 |
Q |
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| T |
7276319 |
tttatatatgactcagattagcaccaaaagttgcaaaatgatccttcaagggagacaataaagggactaatccaacccatttaggataaggctttgtgaa |
7276220 |
T |
|
| Q |
215 |
gtttgtgagtggacataataacataacataaataaacttgtgtaaggatataaactagtttaatatttgaaacagagttcatgtgacacatcaaaccact |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7276219 |
gtttgtgagtggac---ataacataacataaataaacttgtgtaaggatataaactagtttaatatttgaaacagagttcatgtgacacatcaaaccact |
7276123 |
T |
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| Q |
315 |
tccaaaagcaaaccaacttttgaaagctgaattgattgtttgataaactttggagattaaactcaaaagataaatat |
391 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7276122 |
tccaaaagcaaaccaacttttggaagctgaattgattgtttgataaactttggagattaaactc-aaagataaatat |
7276047 |
T |
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