View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_8 (Length: 384)
Name: NF17455_low_8
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 368
Target Start/End: Complemental strand, 51822366 - 51822007
Alignment:
| Q |
9 |
caaaggaaaaatgtacgcacttcttcttcttcagaacaatctcacaggtaagataccggaaagctacagcacctgtttgagtttagaacgattcagagtg |
108 |
Q |
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| T |
51822366 |
caaaggaaaaatgtacgcacttcttcttcttcagaacaatctcacaggtaagataccggaaagctacagcacctgtttgagtttagaacgcctcagagtg |
51822267 |
T |
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| Q |
109 |
agtagaaactcgctctcaggtaccgttccttccggtatttggggattacccaatgttcaagtaattgatgttgaattgaatcagttagaaggttccgtaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51822266 |
agtagaaactcgctctcaggtaccgttccttccggtatttggggattacccaatgttcaagtaattgatgttgaattgaatcagttagaaggttccgtta |
51822167 |
T |
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| Q |
209 |
gttcagagattcaaaaggcgaataaacttgctagtatattcgcaaggagtaaccggttaaccggtgaaataccggaagagatttctaaagcaacgtcgtt |
308 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
51822166 |
gttcagagattcaaaaagcgaataaacttgctagtatattcgcaaggagtaaccggttaacgggtgaaataccggaagagatttctaaagcaacgtcgtt |
51822067 |
T |
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| Q |
309 |
ggtatcaattgatcttagtaacaatcaaatttctgggaacattccagaaggtattggtca |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51822066 |
ggtatcaattgatcttagtaacaatcaaatttctgggaacattccagaaggtattggtca |
51822007 |
T |
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