View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17455_low_9 (Length: 355)
Name: NF17455_low_9
Description: NF17455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17455_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 340
Target Start/End: Complemental strand, 46098133 - 46097811
Alignment:
| Q |
18 |
cttagcacttgaattggctaaagggtcgatgtcgtagttgtgaaaagtggttgaaggtaagtggttcgatgccaagacaattgaagtaaggggaaggggt |
117 |
Q |
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| T |
46098133 |
cttagcacttgaattggctaaagggtcgatgtcgtagttgtgaaaagtggttgaaggtaagtggttccatgccaagacaattgaagtaaggggaaggggt |
46098034 |
T |
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| Q |
118 |
cccgaaccaataaaagcaattttgttagggacatgagtgcagtgttggctaaggatagaaaactcaaggtgaccaagtttgatgtagtttgaataataag |
217 |
Q |
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| T |
46098033 |
cccgaaccaataaaagcaattttgttagggacatgagtgcagtgttggctaaggatagaaaactcaaggtgaccaagtttgatgtagtttgaataataag |
46097934 |
T |
|
| Q |
218 |
ggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagtgtctctccaaatacccttcagcttcaccacatagccttataag |
317 |
Q |
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| T |
46097933 |
ggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagtgtctctccaaatacccttcagcttcaccacatagccttataag |
46097834 |
T |
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| Q |
318 |
atgggatctttttccttgcacag |
340 |
Q |
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| T |
46097833 |
atgggatctttttccttgcacag |
46097811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 314
Target Start/End: Complemental strand, 37484821 - 37484601
Alignment:
| Q |
94 |
acaattgaagtaaggggaaggggtcccgaaccaataaaagcaattttgttagggacatgagtgcagtgttggctaaggatagaaaactcaaggtgaccaa |
193 |
Q |
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| T |
37484821 |
acaagtgaagtaagtggaagtggacctgagccaataaaggcaatttttttaggaacattagtggagtgtttggttaagatattgaattcaaggagactaa |
37484722 |
T |
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| Q |
194 |
gtttgatgtagtttgaataataagggaaaatatggagatgattaagagggttttggtatgagcctaagatggctgaatagtgtctctccaaatacccttc |
293 |
Q |
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| T |
37484721 |
gtttgaggtagtttgaataataagggaaaatgttgagttgattgagtggattattgtatgaagctatgatagttgagtagtgactttctaaatggccttc |
37484622 |
T |
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| Q |
294 |
agcttcaccacatagccttat |
314 |
Q |
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| T |
37484621 |
agcttcaccacatagccttat |
37484601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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