View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17456_low_1 (Length: 449)
Name: NF17456_low_1
Description: NF17456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17456_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 31278180 - 31278019
Alignment:
| Q |
280 |
tattgtaaatgacttgggtttcaaatcaaactattctgnnnnnnnctttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgat |
379 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
31278180 |
tattgaaaatgacttgggtttcaaatcaaactattctgttattttctttgaacaggcacatttgttgaaagagagaggtgacctaatggagctagttgat |
31278081 |
T |
|
| Q |
380 |
agaagattaggttccgatttcaacaaaaaagaagctatgttgatgataaatgtggctctcct |
441 |
Q |
| |
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|| ||||||||||| |||||||| ||||| ||||| ||| ||||||||||||| |||||||| |
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| T |
31278080 |
agcagattaggttcagatttcaaaaaaaaggaagccatggtgatgataaatgtcgctctcct |
31278019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 325 - 441
Target Start/End: Complemental strand, 31370835 - 31370719
Alignment:
| Q |
325 |
ctttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaagaagctatgttgatg |
424 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||| ||||| |
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| T |
31370835 |
ctttgaacaggcacatttgttgaaagagagaggtgacctaatggagttagttgatagaagattaggttcagatttcaacaaaaaggaagccatggtgatg |
31370736 |
T |
|
| Q |
425 |
ataaatgtggctctcct |
441 |
Q |
| |
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|| |||||||||||||| |
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| T |
31370735 |
atcaatgtggctctcct |
31370719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 31381549 - 31381388
Alignment:
| Q |
280 |
tattgtaaatgacttgggtttcaaatcaaactattctgnnnnnnnctttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgat |
379 |
Q |
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||||||||| ||||||||||| |||||||||||||| | |||| ||||||| | ||||||||||| |||||||||||||||||| |||||||| |
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| T |
31381549 |
tattgtaaacgacttgggttttaaatcaaactattccgtttctttctttttacaggcagagttgttgaaagagagaggtgacctaatggagctagttgat |
31381450 |
T |
|
| Q |
380 |
agaagattaggttccgatttcaacaaaaaagaagctatgttgatgataaatgtggctctcct |
441 |
Q |
| |
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|| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
31381449 |
agcagattaggttcagatttcaacaaaaaggaagctatggtgatgataaatgtggctctcct |
31381388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 325 - 441
Target Start/End: Complemental strand, 31241833 - 31241717
Alignment:
| Q |
325 |
ctttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaagaagctatgttgatg |
424 |
Q |
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|||| |||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
31241833 |
ctttgaacaggcacatttgttgaaagagaaaggtgacctgatggagttagttgatagaagattaggttcagatttcaacaaaaaggaagctatggtgatg |
31241734 |
T |
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| Q |
425 |
ataaatgtggctctcct |
441 |
Q |
| |
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|| || ||||||||||| |
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| T |
31241733 |
atcaacgtggctctcct |
31241717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 31302267 - 31302106
Alignment:
| Q |
280 |
tattgtaaatgacttgggtttcaaatcaaactattctgnnnnnnncttt-caacaggcacatttgttgaaagaaagaggtgacctaatggagttagttga |
378 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||| |||||| ||||||| |
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| T |
31302267 |
tattgtaaatgacttgg-tttcaaatcaaactattctttgttttttttttcaacaggcgcatttgttgaaagacagaggtgacctgatggagctagttga |
31302169 |
T |
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| Q |
379 |
tagaagattaggttccgatttcaacaaaaaagaagctatgttgatgataaatgtggctctcct |
441 |
Q |
| |
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|||||||||||||| |||||| ||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
31302168 |
tagaagattaggtttagatttcgacaaaaatgaagctatggtgatgatcaatgtggctctcct |
31302106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 325 - 441
Target Start/End: Complemental strand, 31250751 - 31250635
Alignment:
| Q |
325 |
ctttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaagaagctatgttgatg |
424 |
Q |
| |
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||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| ||||| |
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| T |
31250751 |
ctttcgacaggcacatttgttgaaagagagaggtgacctaatggaactagttgatagaagattaggtttagatttcaacaaaaaggaagctatggtgatg |
31250652 |
T |
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| Q |
425 |
ataaatgtggctctcct |
441 |
Q |
| |
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|| ||||| |||||||| |
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| T |
31250651 |
atcaatgttgctctcct |
31250635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 326 - 441
Target Start/End: Complemental strand, 31312714 - 31312599
Alignment:
| Q |
326 |
tttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaagaagctatgttgatga |
425 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||| |||||| |
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| T |
31312714 |
tttcaacaggcacaattgttgaaagagaaaggtgacctaatggagctagttgatagaagattaggtttagatttcaacaaaaaggaagccatggtgatga |
31312615 |
T |
|
| Q |
426 |
taaatgtggctctcct |
441 |
Q |
| |
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| |||||||||||||| |
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| T |
31312614 |
tgaatgtggctctcct |
31312599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 280 - 441
Target Start/End: Complemental strand, 31287684 - 31287523
Alignment:
| Q |
280 |
tattgtaaatgacttgggtttcaaatcaaactattctgnnnnnnnctttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgat |
379 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||| | || |||||||||||| |||| |||||||| |
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| T |
31287684 |
tattgtaaatgacttgggtttcaaatcaaactattctgtttttttatttgaacaggcacaattattgcatgagagaggtgacctactggaaatagttgat |
31287585 |
T |
|
| Q |
380 |
agaagattaggttccgatttcaacaaaaaagaagctatgttgatgataaatgtggctctcct |
441 |
Q |
| |
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| |||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||| |||||| |
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| T |
31287584 |
aaaagattaggttcagatttcaacaaaaaggaagccatggtgatgatcaatgtgggtctcct |
31287523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 326 - 441
Target Start/End: Complemental strand, 31352730 - 31352615
Alignment:
| Q |
326 |
tttcaacaggcacatttgttgaaagaaagaggtgacctaatggagttagttgatagaagattaggttccgatttcaacaaaaaagaagctatgttgatga |
425 |
Q |
| |
|
||||||||||||||| |||||||||| | |||||||||||||||| |||||||| |||||||||||| ||||| |||||||| ||||| ||| |||||| |
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| T |
31352730 |
tttcaacaggcacatatgttgaaagagaaaggtgacctaatggagctagttgatggaagattaggtttagatttaaacaaaaaggaagccatggtgatga |
31352631 |
T |
|
| Q |
426 |
taaatgtggctctcct |
441 |
Q |
| |
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| T |
31352630 |
tcaatgtggctctcct |
31352615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 275
Target Start/End: Complemental strand, 31371003 - 31370938
Alignment:
| Q |
209 |
tccatttataaaatttcaatatcacgaagaatctaagtgacataatagtgaaatcatattggttttt |
275 |
Q |
| |
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||||||| |||||| | |||||||||||||||| |||||||||||| ||||||||| |||||||||| |
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| T |
31371003 |
tccatttctaaaatattaatatcacgaagaatc-aagtgacataatggtgaaatcaaattggttttt |
31370938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 31287920 - 31287860
Alignment:
| Q |
127 |
gttgaagtcttacactttcctagaaggacggtgatgaggaacgaaaaaggatgtaattgta |
187 |
Q |
| |
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|||||||| |||||||| ||||||||| | ||| ||||| || ||||||||||||||||| |
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|
| T |
31287920 |
gttgaagttttacacttcactagaaggatgttgaagaggatcggaaaaggatgtaattgta |
31287860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 31371098 - 31371050
Alignment:
| Q |
127 |
gttgaagtcttacactttcctagaaggacggtgatgaggaacgaaaaag |
175 |
Q |
| |
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||||||||||||||||| |||||||||| ||| ||| ||| |||||||| |
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| T |
31371098 |
gttgaagtcttacacttccctagaaggatggttatggggatcgaaaaag |
31371050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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