View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17456_low_3 (Length: 317)
Name: NF17456_low_3
Description: NF17456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17456_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 308
Target Start/End: Complemental strand, 19782207 - 19781919
Alignment:
| Q |
20 |
aaacggtacaatcataaatgaaaaacgtgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaa |
119 |
Q |
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| T |
19782207 |
aaacggtaaaatcataaatgaaaaacatgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaa |
19782108 |
T |
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| Q |
120 |
taaattggttctacttcggaccaatttgtgttgtgttgttgatgttgttcttcttgatttcaaatgtttgaggctctccataatctccacaaaatataat |
219 |
Q |
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| T |
19782107 |
taaattggttccagttcggaccaatttgtgttgtgttgttgatgttgttcttcttgatttcaaatgtttgaggctctccataatctccacaaaatataat |
19782008 |
T |
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| Q |
220 |
gttgtcgtacacattgttgcacaaataatttgcaaaatctgaaggtaaagtctgcaatatatatgaaaaataaagtaaataagtataat |
308 |
Q |
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| T |
19782007 |
gttgtcgtacacattgtagcacaaataatttgcaaaatctgaaggtaaagtctgcaatatatatgaaaaataaagtaaataagtataat |
19781919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 14570218 - 14570064
Alignment:
| Q |
20 |
aaacggtacaatcataaatgaaaaacgtgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaa |
119 |
Q |
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| T |
14570218 |
aaacggtacaatcataaatgaaaaacgtgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaa |
14570119 |
T |
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| Q |
120 |
taaattggttctacttcggaccaatttgtgttgtgttgttgatgttgttcttctt |
174 |
Q |
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| T |
14570118 |
taaattggttccacttcggaccaatttgtgttgtgttgttgatgttgtttttctt |
14570064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 14570063 - 14569953
Alignment:
| Q |
198 |
cataatctccacaaaatataatgttgtcgtacacattgttgcacaaataatttgcaaaatctgaaggtaaagtctgcaatatatatgaaaaataaagtaa |
297 |
Q |
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||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14570063 |
cataatctccacaaaatataatgttatcgcacacattgtagcacaaataatttgcaaaatttgaaggtaaagtctgcaatatatatgaaaaataaagtaa |
14569964 |
T |
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| Q |
298 |
ataagtataat |
308 |
Q |
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||||||||||| |
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| T |
14569963 |
ataagtataat |
14569953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 54599021 - 54599118
Alignment:
| Q |
29 |
aatcataaatgaaaaacgtgacaaacataataattattggtaacaaatttaaatcttatatagtctccaatataaaaattctgctgaacaataaattg |
126 |
Q |
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|||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| | || |||||||||| |||||||| || |||||| |
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| T |
54599021 |
aatcataattgaaaaacgtgacatacataataattattcaaaataaatttaaatcttatataaccccctatataaaaatcctgctgaagaacaaattg |
54599118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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