View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17457_high_1 (Length: 409)
Name: NF17457_high_1
Description: NF17457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17457_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 586536 - 586923
Alignment:
| Q |
11 |
cacagacaatgtcaatatcgatagtaatccgagaatatggaattattgagtgtaactgcatgtgtctgtgttggactcatacacatgtcgaatatcggct |
110 |
Q |
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| T |
586536 |
cacagacaatgtcaatatcgatagtaatccgagaatatggaattattgagtgtaactgcatgtgtctgtgttggactcatacacatgtcgaatatcggct |
586635 |
T |
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| Q |
111 |
acatggacaatatgaagtttttgctgacaacggtgaacgtctgggaacttatcgaggccataatggtgccgtctggtgctgcgatgtatctagtacgttc |
210 |
Q |
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| T |
586636 |
acatggacaatatgaagtttttgctgacaacggtgaacgtctgggaacttattgaggccataatggtgcagtctggtgctgcgatgtctctagtacgttc |
586735 |
T |
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| Q |
211 |
ttcctcttcaattttgatgagttgataatatttttatgtagtaaaatttaagttaaattgatggttggggtggttgcactagattcgggtcgactcatta |
310 |
Q |
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| T |
586736 |
ttcctcttcaattttgatgagttgataatatttttatgtagtaaaatttaagttaaattgatggttggggtggttgcactagattcgggtcgactcatta |
586835 |
T |
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| Q |
311 |
ccggcagtgctgaccagacagtgaagctatggaatgtgcaaagtggtcagcaattgttcaccttcaattttgacacacttatgatgat |
398 |
Q |
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| T |
586836 |
ccggcagtgctgaccagacagtgaagctatggaatgtgcaaagtggtcagcaattgttcaccttcaattttgacacacttatggtgat |
586923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 383
Target Start/End: Original strand, 36869350 - 36869441
Alignment:
| Q |
292 |
gattcgggtcgactcattaccggcagtgctgaccagacagtgaagctatggaatgtgcaaagtggtcagcaattgttcaccttcaattttga |
383 |
Q |
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| T |
36869350 |
gattccggtcggcttattaccggcagtgctgatcagactgctaagttgtggaatgtgcagactggtcagcagttgtttacttttaattttga |
36869441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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