View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17457_high_3 (Length: 385)
Name: NF17457_high_3
Description: NF17457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17457_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 139 - 368
Target Start/End: Original strand, 19891711 - 19891946
Alignment:
| Q |
139 |
tctaaactttgtgcatttcaacatatcctctgtctttgtttatgtcaatgatttgaa----tgcataattttttggatagtccgttttcttgttattttg |
234 |
Q |
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| T |
19891711 |
tctaaactttatgcatttcaacatatcctctgtctttgtttatgtcaatgatttgaagttgtgcataatcttttagatagtccgttttcttgttattttg |
19891810 |
T |
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| Q |
235 |
attacagtgaactgcaattacggactagaaatcataat--nnnnnnntcactgatttcttattcaatgaaagattgtgagaataatttatcattttcttt |
332 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||| |
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| T |
19891811 |
attatagtgaactgcaattacggactagaaatcataataataaaaaatcactgatttattcttcaatgaaagtttgtgagaataatttatcattttcttt |
19891910 |
T |
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| Q |
333 |
tatactgccgcagcttatctcaaatgacaggtttgt |
368 |
Q |
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||||| | ||||||||||||||||||||||||||| |
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| T |
19891911 |
tatacggttgcagcttatctcaaatgacaggtttgt |
19891946 |
T |
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