View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17457_low_11 (Length: 209)
Name: NF17457_low_11
Description: NF17457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17457_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 28733881 - 28734055
Alignment:
| Q |
21 |
tgaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtca |
120 |
Q |
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| T |
28733881 |
tgaagtgacatttctcagtatagattatcttccattttgattttcttctactttgataggaacaaggattaatcaaaacaaatgtaaatcttagtcgtca |
28733980 |
T |
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| Q |
121 |
ccaatcttgta---nnnnnnnncgattaaaatgtgaagtgattatttctattgttactttcgttacattaatttt |
192 |
Q |
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| T |
28733981 |
ccaatcttgtatttttttttttcaattaaaatgtgaagtgattatttctattgtttctttcgtttcattgatttt |
28734055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 28727670 - 28727841
Alignment:
| Q |
21 |
tgaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtca |
120 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
28727670 |
tgaagtgacatttctcagtatagattatcttcaattttcattttcttctactt-gagagaaacaaggattgatcaaaacaaatgtaagtctttgttgtcg |
28727768 |
T |
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| Q |
121 |
ccaatcttgta-nnnnnnnncgattaaaatgtgaagtgattatttctattgttactttcgttacattaatttt |
192 |
Q |
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| T |
28727769 |
ccaatcttgtatttttttttcgattaaaatgtgaagtgattatttctattgtttctttcgttgcattaatttt |
28727841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 32280896 - 32280992
Alignment:
| Q |
22 |
gaagtgacatttcttagtatagattatcttccattttgattttcttctactttgataggaacaaggattgatcaaaacaaatgtaagtctttgtcgtc |
119 |
Q |
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||||| ||||||| | ||||||||||||| |||||| |||| ||||||| | || ||||||||||||| ||||||| ||||| |||||||| ||||| |
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| T |
32280896 |
gaagtaacatttcacaatatagattatctttcattttcatttgcttctacat-gagaggaacaaggattaatcaaaataaatgcaagtctttatcgtc |
32280992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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