View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17457_low_4 (Length: 374)
Name: NF17457_low_4
Description: NF17457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17457_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 28304796 - 28304449
Alignment:
| Q |
14 |
agtttttacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataac |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28304796 |
agtttctacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataac |
28304697 |
T |
|
| Q |
114 |
tcttggattggcctctggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagt |
213 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
28304696 |
tcttggattggcctctggtttgctgtatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaagtaatgttatgctagattcaagt |
28304597 |
T |
|
| Q |
214 |
tttaatgttaagcttggtgattttgggttggcaaaattaatggaccatgaacttggtcctcaaacgacagggttggccggaacatttggatatctagcac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| || |||||||| | |
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|
| T |
28304596 |
tttaatgttaagcttggtgattttgggttggctaaattaatggaccatgaacttgggcctcaaacgacggggctggccggaacattcggctatctagctc |
28304497 |
T |
|
| Q |
314 |
cagaatatgtgagtacaggtagggcaagtaaagagtcagatgtgtata |
361 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
28304496 |
cagaatatgtgagtacaggaagggcgagtaaagagtcagatgtttata |
28304449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 28294594 - 28294247
Alignment:
| Q |
14 |
agtttttacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataac |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
28294594 |
agtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaatagc |
28294495 |
T |
|
| Q |
114 |
tcttggattggcctctggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagt |
213 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
28294494 |
tcttggattggcttctggtttgctttatctacatgaagaatgggagaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagactcaagt |
28294395 |
T |
|
| Q |
214 |
tttaatgttaagcttggtgattttgggttggcaaaattaatggaccatgaacttggtcctcaaacgacagggttggccggaacatttggatatctagcac |
313 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || ||||| || ||| |||||||||||||||| |||||||| | |
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|
| T |
28294394 |
ttcaatgtcaagcttggtgattttgggttggctaagttaatggaccatgaacttgggccgcaaacaactgggctggccggaacatttggctatctagctc |
28294295 |
T |
|
| Q |
314 |
cagaatatgtgagtacaggtagggcaagtaaagagtcagatgtgtata |
361 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28294294 |
cggaatatgtgagcacaggtagggcaagtaaagagtcagatgtgtata |
28294247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 28264779 - 28264432
Alignment:
| Q |
14 |
agtttttacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataac |
113 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| | |
|
|
| T |
28264779 |
agtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaaggacacctcttccttggattgtaaggcacaaaatagc |
28264680 |
T |
|
| Q |
114 |
tcttggattggcctctggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagt |
213 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28264679 |
acttggcttggcctctggtgtgctttatctacatgaagaatgggagaggtgtgtggtacatagggatattaaatcaagtaatgttatgctagattctagt |
28264580 |
T |
|
| Q |
214 |
tttaatgttaagcttggtgattttgggttggcaaaattaatggaccatgaacttggtcctcaaacgacagggttggccggaacatttggatatctagcac |
313 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| || ||||||||||||| |||| || ||||| |||| | | |||||||| || || ||| | || | |
|
|
| T |
28264579 |
ttcaatgttaagcttggtgactttgggttggctaagctaatggaccatgagattggaccccaaacaacagtggttgccggaaccttaggctatatggctc |
28264480 |
T |
|
| Q |
314 |
cagaatatgtgagtacaggtagggcaagtaaagagtcagatgtgtata |
361 |
Q |
| |
|
| |||||| | |||||||||| | | || ||||||||||||||||||| |
|
|
| T |
28264479 |
cggaatatataagtacaggtaagactagcaaagagtcagatgtgtata |
28264432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 361
Target Start/End: Original strand, 28288957 - 28289304
Alignment:
| Q |
14 |
agtttttacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataac |
113 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||| || |||||| | |
|
|
| T |
28288957 |
agtttctacttgtttatgagttcatgccaaatggtagtcttgattctcatttattcggaaaaaggacacctctttcttggagtgtaagacataaaatagc |
28289056 |
T |
|
| Q |
114 |
tcttggattggcctctggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagt |
213 |
Q |
| |
|
|||||||||||| | ||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
28289057 |
tcttggattggcttttggggtactttatctacatgaagaatgggagaggtgtgtggttcatagagatatcaaatcaagtaatgttatgctagattctagt |
28289156 |
T |
|
| Q |
214 |
tttaatgttaagcttggtgattttgggttggcaaaattaatggaccatgaacttggtcctcaaacgacagggttggccggaacatttggatatctagcac |
313 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| ||| ||||||| ||||| |||| || ||||| |||| | | |||||||| || || ||| | || | |
|
|
| T |
28289157 |
ttcaatgttaagcttggtgactttgggttggctaaactaatggatcatgagattggaccccaaacaacagtggttgccggaaccttaggctatttggctc |
28289256 |
T |
|
| Q |
314 |
cagaatatgtgagtacaggtagggcaagtaaagagtcagatgtgtata |
361 |
Q |
| |
|
|||||||| | |||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
28289257 |
cagaatatataagtacaggtaaggctagcaaagagtcagatgtgtata |
28289304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 26 - 361
Target Start/End: Original strand, 28279104 - 28279439
Alignment:
| Q |
26 |
tttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaaagaacacctctttcttggggtgtaaggcacaaaataactcttggattggc |
125 |
Q |
| |
|
|||||||||| ||||| || ||||| || ||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| | |||| |||||| |
|
|
| T |
28279104 |
tttatgagtttatgcctaacggtagcctggattctcatttatttggtaaaagaatacctctttcttggagtctaaggcacaaaatagcacttgaattggc |
28279203 |
T |
|
| Q |
126 |
ctctggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagttttaatgttaag |
225 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
28279204 |
atctggtgtgctttatttacatgaagaatgggaaaaatgtgtggtacatagggatattaaatcaagtaatgttatgttagattctagtttcaatgtcaag |
28279303 |
T |
|
| Q |
226 |
cttggtgattttgggttggcaaaattaatggaccatgaacttggtcctcaaacgacagggttggccggaacatttggatatctagcaccagaatatgtga |
325 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||| | | || ||||| || |||||| | || ||||||||| | | |
|
|
| T |
28279304 |
cttggtgattttgggttggctaaattaatagaccatgagcttgggcctcaaacaacagtgattgctggaaccttaggatatttggctccagaatatataa |
28279403 |
T |
|
| Q |
326 |
gtacaggtagggcaagtaaagagtcagatgtgtata |
361 |
Q |
| |
|
||||||||| ||| || ||||| || ||||| |||| |
|
|
| T |
28279404 |
gtacaggtaaggctagcaaagaatctgatgtctata |
28279439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 278
Target Start/End: Complemental strand, 28341969 - 28341827
Alignment:
| Q |
136 |
ctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagttttaatgttaagcttggtgatt |
235 |
Q |
| |
|
|||||| |||||||||| |||||| ||||| || ||||| |||||||| ||||||||||| ||||||||| | | ||| |||| ||| |||||||||| |
|
|
| T |
28341969 |
ctttatttacatgaagagtgggaacaatgtgtagtgcatagagatattaagtcaagtaatgtaatgttagatgcaaatttcaatgctaaacttggtgatt |
28341870 |
T |
|
| Q |
236 |
ttgggttggcaaaattaatggaccatgaacttggtcctcaaac |
278 |
Q |
| |
|
|||| | |||| | || | || |||||||||||| ||||||| |
|
|
| T |
28341869 |
ttggtcttgcaagactagtagatcatgaacttggttctcaaac |
28341827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 43363692 - 43363761
Alignment:
| Q |
170 |
ttcatagggatattaaatcaagtaatgttatgttagattctagttttaatgttaagcttggtgattttgg |
239 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| | ||| |||| |||||||||||| ||||| |
|
|
| T |
43363692 |
ttcatagggatataaaatcaagtaatgttatgttgtattcaaatttcaatgctaagcttggtgactttgg |
43363761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 28342088 - 28342030
Alignment:
| Q |
17 |
ttttacttatttatgagttcatgccaaatggtagtcttgattctcatttatttggtaaa |
75 |
Q |
| |
|
|||||||| ||||||| | |||||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
28342088 |
ttttacttgtttatgaatacatgcctaatggaagtcttgattatcatctatttggtaaa |
28342030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 36931314 - 36931420
Alignment:
| Q |
133 |
ttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagttttaatgttaagcttggtg |
232 |
Q |
| |
|
|||||||| ||||| |||||||||||| ||||||| |||| ||||| |||||||| ||||| ||||||| ||||| |||| |||| | |||||||| |
|
|
| T |
36931314 |
ttgctttacctacaggaagaatgggaacagtgtgtgcttcacagggacattaaatccagtaacattatgttggattcatgtttcaatgctcggcttggtg |
36931413 |
T |
|
| Q |
233 |
attttgg |
239 |
Q |
| |
|
||||||| |
|
|
| T |
36931414 |
attttgg |
36931420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 36934427 - 36934520
Alignment:
| Q |
98 |
taaggcacaaaataactcttggattggcctctggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaag |
191 |
Q |
| |
|
||||| |||| ||| ||||||| |||||||| | ||||||||| | || ||||||||||||| |||||| |||||||||| || |||||||| |
|
|
| T |
36934427 |
taaggtacaatatagctcttgggttggcctcggcattgctttatttgcaggaagaatgggaaaaatgtgtgattcatagggacataaaatcaag |
36934520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 47871591 - 47871697
Alignment:
| Q |
139 |
tatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattctagttttaatgttaagcttggtgattttg |
238 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||| || || ||||| || || ||||||| || |||||| |||| |||||||||||||||| |
|
|
| T |
47871591 |
tatcttcatgaagaatgggaacaatgtgtgattcatagagacataaaatccagcaacattatgttggacgatagtttcaatgcaaagcttggtgattttg |
47871690 |
T |
|
| Q |
239 |
ggttggc |
245 |
Q |
| |
|
||||||| |
|
|
| T |
47871691 |
ggttggc |
47871697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 22875094 - 22875014
Alignment:
| Q |
130 |
ggtttgctttatctacatgaagaatgggaaaggtgtgtggttcatagggatattaaatcaagtaatgttatgttagattct |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||| ||||||| || || ||| | |||||||| ||||||||||| |
|
|
| T |
22875094 |
ggtttggtttatctacatgaagaatgggaaaaagttgtgattcatagagacataaaagctagtaatgtgttgttagattct |
22875014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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