View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17457_low_7 (Length: 304)

Name: NF17457_low_7
Description: NF17457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17457_low_7
NF17457_low_7
[»] chr3 (1 HSPs)
chr3 (1-298)||(4292430-4292727)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 4292727 - 4292430
Alignment:
Q  1 tttacaaacaagcttgcctatgctcctctagttggttcagctgctctgagacttctagtccttttttcttgcactgccttgcaataaggacacttcatgg 100  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||||||||||    
T  4292727 tttacaaacaggcttgcctatgctcctctggttggttcagctgctctgagacttctggtccttttttcttgcattgccttccaataatgacacttcatgg 4292628  T
Q  101 gttactagtaataatattttgcttcttggatcttgtagtaattctgtcagagttgttgccagcctgatttttagggctcttatgctttttcgattttctg 200  Q
    ||||  |||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  4292627 gttaacagtagtaatattttgcttcttggatcttgtagtaattatgttagagttgttgccagcctgattttttgggctcttatgctttttcgatttcctg 4292528  T
Q  201 ccacacttaatagagctagccaaaatagtttgagtatccagacattgctcaacatctttgtacctccgcatgctatccatatgttttttagtgtctgt 298  Q
    ||| |||||||| ||||| || ||| ||||||||||||||||||||| ||| ||| | ||| |||  ||| ||||||||||||||| |||||||||||    
T  4292527 ccagacttaatatagctaacccaaacagtttgagtatccagacattgttcagcatatgtgtgcctatgcaagctatccatatgtttcttagtgtctgt 4292430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University