View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_high_2 (Length: 487)
Name: NF17458_high_2
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 6 - 487
Target Start/End: Original strand, 23152074 - 23152561
Alignment:
| Q |
6 |
agtgagatgaacataaaacaatgataagagagtataaatgatggttgttgcttactgttgttgttgtaactgcaaacagagtcaggagtatcagcaaagt |
105 |
Q |
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| T |
23152074 |
agtgaaatgaacataaaacaatgataggagaatataaaagtttgttgctgcttacttttgttattgtaactgcaaacagagtcaggagtatcagcaaagt |
23152173 |
T |
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| Q |
106 |
gcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctagataaatcattatttgcagattctggcaacaattttttcac |
205 |
Q |
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| T |
23152174 |
gcaaagcagacgaccaaggatagataaacctcacatgatctgcccatgaacacttgctagataaatcattatttgcagattctggcagcaattttttcac |
23152273 |
T |
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| Q |
206 |
agcctttgcagctgcgtcgctaagtcgagcctgttatcacaaaatcagaaacgaaagcaaaattagtacaaaaatcaaactc------ataaacatttct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23152274 |
agcctttgcagctgcgtcgctaagtcgagcctgttatcacaaaatcagaaacgaaagcaaaattagtacaaaaatcaaactcataattataaacatttct |
23152373 |
T |
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| Q |
300 |
tgtattcatgtagtcaggacagttcactttagatcggacggtcaaaattcaagtttagtatttcaaattactaaaatttaaattttttggctcgtccaat |
399 |
Q |
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| T |
23152374 |
tgcattcatgtagtcaagacagttcactttagatcagacggtcaaaattcaagtttaatatttcaaattactaaaatttaaattttttggctcgtccaat |
23152473 |
T |
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| Q |
400 |
caagatggaacggccacttatgtttgactgcgtgaatgtatgatcccttaacagtggtaaattctacttcaaaatattgaaagataac |
487 |
Q |
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| T |
23152474 |
caagatggaacggccacttatgtttgactgcgtgaatgtatgatcccctaacagtggtaaattctacttcaaaatattgaaagataac |
23152561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 23135661 - 23135811
Alignment:
| Q |
69 |
ttgtaactgcaaacagagtcaggagtatcagcaaagtgcaaagcagaagaccaaggatagataaatctaacatgatctgcccatgaacacttgctagata |
168 |
Q |
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|||||| |||||||| |||||| |||||||||||||| | || |||||||| || ||||||| || ||||||||||||||||||||||||||||||| |
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| T |
23135661 |
ttgtaagtgcaaacattgtcaggtgtatcagcaaagtgtagaggggaagaccactgaaagataaacctcacatgatctgcccatgaacacttgctagata |
23135760 |
T |
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| Q |
169 |
aatcattatttgcagattctggcaacaattttttcacagcctttgcagctg |
219 |
Q |
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| T |
23135761 |
aatcattgtttgcagattctggcaacaattttttcacagccttagcagctg |
23135811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 49866626 - 49866654
Alignment:
| Q |
93 |
gtatcagcaaagtgcaaagcagaagacca |
121 |
Q |
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| T |
49866626 |
gtatcagcaaagtgcaaagcagaagacca |
49866654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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