View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_high_8 (Length: 304)
Name: NF17458_high_8
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 285
Target Start/End: Complemental strand, 43495984 - 43495714
Alignment:
| Q |
15 |
cacagaaatgataaaaattggcttaaattcttcagatataatgccctttaataacacattattagtttaccaaactcatccaaaaataagaaaggcaaaa |
114 |
Q |
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| T |
43495984 |
cacagaaatgataaaaattggcttaaattcttcagatataatgcccttcaataacgcattattagtttaccaaactcatccaaaaataagaaaggcaaaa |
43495885 |
T |
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| Q |
115 |
taagttattccagaatcgtctggggataaaatgaactaactcaatgagtaagcaacataagtcgcattacatgttcgtcaaagatatctgtaaaggatcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43495884 |
taagttattccagaatcgtctggggataaaatgaactaactcgatgagtaagcaacataagtcgcattacatgttcgtcaaagatatctgtaaaggatcc |
43495785 |
T |
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| Q |
215 |
tatgtcaaaaggccacaagattacnnnnnnntgaaaacatcgacactagccaaagtctgccatcacatgga |
285 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43495784 |
tatgtcaaaaggccacaagattacaaaaaaatgaaaacatcgacattagccaaagtctgccatcacatgga |
43495714 |
T |
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