View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17458_low_12 (Length: 239)

Name: NF17458_low_12
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17458_low_12
NF17458_low_12
[»] chr4 (2 HSPs)
chr4 (18-239)||(7301782-7302003)
chr4 (208-239)||(7277646-7277677)
[»] chr5 (1 HSPs)
chr5 (84-137)||(24878811-24878864)
[»] chr1 (2 HSPs)
chr1 (86-137)||(36571322-36571373)
chr1 (84-126)||(33378966-33379008)
[»] chr7 (2 HSPs)
chr7 (82-138)||(10648913-10648970)
chr7 (207-239)||(22559369-22559401)
[»] chr6 (2 HSPs)
chr6 (84-137)||(14762579-14762632)
chr6 (85-125)||(4029799-4029839)
[»] chr8 (4 HSPs)
chr8 (80-126)||(15340555-15340601)
chr8 (80-126)||(15429620-15429666)
chr8 (80-126)||(15520924-15520970)
chr8 (87-137)||(16601009-16601059)
[»] chr2 (2 HSPs)
chr2 (83-125)||(23781106-23781148)
chr2 (83-117)||(25597968-25598002)
[»] chr3 (3 HSPs)
chr3 (84-117)||(8736820-8736853)
chr3 (84-117)||(9089061-9089094)
chr3 (85-126)||(12145429-12145470)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 7302003 - 7301782
Alignment:
Q  18 ataggaaacttgtaagttgtttacaaccaaaatggaatcaatagaataacgtcagaaaagatggtgttgttagcctgtaatttcaacatgctcatttaat 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7302003 ataggaaacttgtaagttgtttataaccaaaatggaatcaatagaataacgtcagaaaagatggtgttgttagcctgtaatttcaacatgctcatttaat 7301904  T
Q  118 gtagtcaatatcagttgactaccaaaaacaccggtaaacaggtgtataatataatatgaccactactaatgcttcttttgtttttgtcaatagatcttca 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7301903 gtagtcaatatcagttgactaccaaaaacactggtaaacaggtgtataatataatatgaccactactaatgcttcttttgtttttgtcaatagatcttca 7301804  T
Q  218 caaatgcagacaaagttcatgc 239  Q
    ||||||||||||||||||||||    
T  7301803 caaatgcagacaaagttcatgc 7301782  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 208 - 239
Target Start/End: Original strand, 7277646 - 7277677
Alignment:
Q  208 tagatcttcacaaatgcagacaaagttcatgc 239  Q
    ||||||||||||||||||||||||||||||||    
T  7277646 tagatcttcacaaatgcagacaaagttcatgc 7277677  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 24878864 - 24878811
Alignment:
Q  84 ttgttagcctgtaatttcaacatgctcatttaatgtagtcaatatcagttgact 137  Q
    |||||||||||||||||||||| |||||||||||| |||||| || ||||||||    
T  24878864 ttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgact 24878811  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 36571322 - 36571373
Alignment:
Q  86 gttagcctgtaatttcaacatgctcatttaatgtagtcaatatcagttgact 137  Q
    |||||||| ||||||||||| ||||||||||||||||||| || ||||||||    
T  36571322 gttagcctataatttcaacaagctcatttaatgtagtcaacattagttgact 36571373  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 33378966 - 33379008
Alignment:
Q  84 ttgttagcctgtaatttcaacatgctcatttaatgtagtcaat 126  Q
    |||||||||||||||||| ||||||||| |||||| |||||||    
T  33378966 ttgttagcctgtaatttcgacatgctcaattaatgcagtcaat 33379008  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 10648913 - 10648970
Alignment:
Q  82 tgttgttagcctgtaattt-caacatgctcatttaatgtagtcaatatcagttgacta 138  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| ||  ||||||||    
T  10648913 tgttgttagcctgtaattttcaacatgctcatttaatgtggtcaacattggttgacta 10648970  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 22559401 - 22559369
Alignment:
Q  207 atagatcttcacaaatgcagacaaagttcatgc 239  Q
    |||||||||||||||||||||||||||||||||    
T  22559401 atagatcttcacaaatgcagacaaagttcatgc 22559369  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 14762579 - 14762632
Alignment:
Q  84 ttgttagcctgtaatttcaacatgctcatttaatgtagtcaatatcagttgact 137  Q
    ||||||| |||||||||||||||||| |||||||| |||||| || ||||||||    
T  14762579 ttgttagtctgtaatttcaacatgcttatttaatgcagtcaacattagttgact 14762632  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 4029799 - 4029839
Alignment:
Q  85 tgttagcctgtaatttcaacatgctcatttaatgtagtcaa 125  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  4029799 tgttagcctgtaatttcgacatactcatttaatgtagtcaa 4029839  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 15340555 - 15340601
Alignment:
Q  80 ggtgttgttagcctgtaatttcaacatgctcatttaatgtagtcaat 126  Q
    ||||||||| |||||||||||||||| ||||| |||||| |||||||    
T  15340555 ggtgttgtttgcctgtaatttcaacaggctcaattaatgcagtcaat 15340601  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 15429620 - 15429666
Alignment:
Q  80 ggtgttgttagcctgtaatttcaacatgctcatttaatgtagtcaat 126  Q
    ||||||||| |||||||||||||||| ||||| |||||| |||||||    
T  15429620 ggtgttgtttgcctgtaatttcaacaggctcaattaatgcagtcaat 15429666  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 15520924 - 15520970
Alignment:
Q  80 ggtgttgttagcctgtaatttcaacatgctcatttaatgtagtcaat 126  Q
    ||||||||| |||||||||||||||| ||||| |||||| |||||||    
T  15520924 ggtgttgtttgcctgtaatttcaacaggctcaattaatgcagtcaat 15520970  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 16601059 - 16601009
Alignment:
Q  87 ttagcctgtaatttcaacatgctcatttaatgtagtcaatatcagttgact 137  Q
    |||||||||||||||||||  ||||||||||| |||||| || ||||||||    
T  16601059 ttagcctgtaatttcaacagactcatttaatgcagtcaacattagttgact 16601009  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 23781148 - 23781106
Alignment:
Q  83 gttgttagcctgtaatttcaacatgctcatttaatgtagtcaa 125  Q
    |||||||| |||||||||||||| ||||||||||||| |||||    
T  23781148 gttgttagactgtaatttcaacaggctcatttaatgtggtcaa 23781106  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 25598002 - 25597968
Alignment:
Q  83 gttgttagcctgtaatttcaacatgctcatttaat 117  Q
    ||||||||||||||||||| |||||||||||||||    
T  25598002 gttgttagcctgtaatttcgacatgctcatttaat 25597968  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 8736820 - 8736853
Alignment:
Q  84 ttgttagcctgtaatttcaacatgctcatttaat 117  Q
    |||||||||||||||||||||| |||||||||||    
T  8736820 ttgttagcctgtaatttcaacaggctcatttaat 8736853  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 117
Target Start/End: Original strand, 9089061 - 9089094
Alignment:
Q  84 ttgttagcctgtaatttcaacatgctcatttaat 117  Q
    |||||||||||||||||||||| |||||||||||    
T  9089061 ttgttagcctgtaatttcaacaggctcatttaat 9089094  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 12145470 - 12145429
Alignment:
Q  85 tgttagcctgtaatttcaacatgctcatttaatgtagtcaat 126  Q
    |||||||||||| |||||||| |||||||||||| |||||||    
T  12145470 tgttagcctgtagtttcaacaagctcatttaatgcagtcaat 12145429  T

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