View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_low_14 (Length: 238)
Name: NF17458_low_14
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2116474 - 2116237
Alignment:
| Q |
1 |
cacagatattagcatatagcataaccaaatctagaagctgaagttcatcaattcaatcatacagcatgagtaccagtttgtgtgtgcaactgctattggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2116474 |
cacagatattagcatatagcataaccaaatctagaagctgaagttcatcaattcaatcatacagcatgagtaccagtttgtgtgtgcaagtgctattggt |
2116375 |
T |
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| Q |
101 |
gtgaatcattgaagaaagactcagatactaaaatccaagctatgaatctgtgctacacatgcaagcagcctcatgtgtatgatatattttctatcattgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2116374 |
gtgaatcattgaagaaagactcagatactaaaatccaagctatgaatctgtgctacacatgcaagcagcctcttgtgtatgatatattttctatcattgt |
2116275 |
T |
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| Q |
201 |
ctagcattgcagaaaataatggttttggtcagattcaa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
2116274 |
ctagcattgcagaaaataatggttttggtcagattcaa |
2116237 |
T |
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