View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_low_3 (Length: 412)
Name: NF17458_low_3
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 9866389 - 9866027
Alignment:
| Q |
18 |
taaactatgtcccagtactaaccactgcacttcaacaacataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaag |
117 |
Q |
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| T |
9866389 |
taaactatgtcccagtactaaccactgcacttcaacaacataaggggcacataatgaatttaagggtttccataattaatgtttgtaaggtgactagaag |
9866290 |
T |
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| Q |
118 |
aacatatacatttatagcaaaataataatgataattatgtgaaaaatattgtaggtttaatataatttttataaccaaccgacatcagtcttaacaagca |
217 |
Q |
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| T |
9866289 |
aacatatacatttatagcaaaatgataatgatatttatgtgaaaaatattgtaggtttaatataattttt-taaccaaccgacatcagtcttaacaagca |
9866191 |
T |
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| Q |
218 |
tgagtaataataatgtaccaaaaaagcatgagtaatacttggcttnnnnnnnnnnnnnnnnnntcatggtatggcatcacctcgtgaaattgttcaaata |
317 |
Q |
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| T |
9866190 |
tgag---taataatgtaccaaaaaagcatgagtaatacttggcttaaaaaaaaaaggc------catggtatggcgtcacctcgtgaaattgttcaaata |
9866100 |
T |
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| Q |
318 |
ggtaggaagcctcctttaccgggatgggttaagttgaatacggataattcttatagaggtaatgggttacccg |
390 |
Q |
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| T |
9866099 |
ggtaggaagcctcctttaccgggatgggttaagttgaatacggataattcttatagaggtaatgggttacccg |
9866027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 386
Target Start/End: Complemental strand, 4065163 - 4065064
Alignment:
| Q |
287 |
tatggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccgggatgggttaagttgaatacggataattcttatagaggtaatgggtta |
386 |
Q |
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| T |
4065163 |
tatggcgtcacctcgtgaaattgttcaaagtggttggaagcctcttttagagggacgagttaagttgaatacggatgactgttgtagagataatgggtta |
4065064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 24184874 - 24184804
Alignment:
| Q |
290 |
ggcatcacctcgtgaaattgttcaaataggtaggaagcctcctttaccggg--atgggttaagttgaatac |
358 |
Q |
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| T |
24184874 |
ggcatcaccttgtgaaattgttcaaattggttggaagcctcctttagagggatataggttaagttgaatac |
24184804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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