View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_low_4 (Length: 336)
Name: NF17458_low_4
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 31782329 - 31782017
Alignment:
| Q |
18 |
agaaggaaacctacccagaaatttcaagtaactttcataactatcagctgcacccgctaaccaaaacttatcataatgaatcttcaacaatttccctaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31782329 |
agaaggaaacctacccagaaatttcaagtaactttcataactatcagctgcacctgctaaccaaaacttatcataatgaatcttcaacaatttccctaat |
31782230 |
T |
|
| Q |
118 |
tcttcaacaaacccaccatcatcatcgttcacaaaagacttcaactctccaaaactcactataacacccggtcccacacactcctccactatggcagcaa |
217 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31782229 |
tcttcaacaaacccaccatcatc---gttgacaaaagacttcaactctccaaaactcactataacacccggtcccacacactcctccactatggcagcaa |
31782133 |
T |
|
| Q |
218 |
tctgctttaacttcaaactcaccacctcacagtcaccactctctaactccttcccaatacaaatcactcgcaacccggcaagttccaaaggtaaaactcc |
317 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31782132 |
tctgctttaacttcaaactcaccacctcgcagtcaccactctctaactccttcccaatacaaatcactcgcaacccgtcaagttccaaaggtaaaactcc |
31782033 |
T |
|
| Q |
318 |
ttctctctgctcctcc |
333 |
Q |
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||||||| ||| |||| |
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| T |
31782032 |
ttctctccgcttctcc |
31782017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 86 - 324
Target Start/End: Original strand, 19635944 - 19636179
Alignment:
| Q |
86 |
tatcataatgaatcttcaacaatttccctaattcttcaacaaacccaccatcatcatcgttcacaaaagacttcaactctccaaaactcactataacacc |
185 |
Q |
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| T |
19635944 |
tatcataatgaatcttcaacaatttccctaattcttcaacaaacccaccatc---atcgttcacaaaagacttcaactctccaaaactcactataacacc |
19636040 |
T |
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| Q |
186 |
cggtcccacacactcctccactatggcagcaatctgctttaacttcaaactcaccacctcacagtcaccactctctaactccttcccaatacaaatcact |
285 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19636041 |
cggtcccacacactcctccgctatggcagcaatctgctttaacttcaaactcaccacctcgcagtcaccactctctaactccttcccaatacaaatcaca |
19636140 |
T |
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| Q |
286 |
cgcaacccggcaagttccaaaggtaaaactccttctctc |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
19636141 |
cgcaacccggcaagttccaaaggtaaaactccttctctc |
19636179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 19635903 - 19635948
Alignment:
| Q |
18 |
agaaggaaacctacccagaaatttcaagtaactttcataactatca |
63 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19635903 |
agaaggaaacctacccagaaatttcaagtaactttcataactatca |
19635948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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