View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17458_low_5 (Length: 332)
Name: NF17458_low_5
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 175 - 325
Target Start/End: Original strand, 16520703 - 16520859
Alignment:
| Q |
175 |
tcctaaatgtataataatagtaaggggtctggtgtagtttcattggtggtgtgagttagcttgttgtaggacttcaacattttct------tttgttcta |
268 |
Q |
| |
|
||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16520703 |
tcctaaatgtataataatagtaaggggcatgctgcagtttcattggtggtgtgagttagcttgttgtaggacttcaacattttcttctgtgtttgttcta |
16520802 |
T |
|
| Q |
269 |
tctcagtttttctctctaaatatacattcttttatttaatgaacaatctttcatctc |
325 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
16520803 |
tctcagtttttctctctaaatatagattcttttatttaatgaacaatctttcatctc |
16520859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 16520547 - 16520662
Alignment:
| Q |
19 |
catataacctttgtaagcaacacaaaacaaattatcggtggtcatgagaggtcattcnnnnnnncatcaaccattcatgattatttttatttatatgtta |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16520547 |
catataacctttgtaagcaacacacaacaaattatcggtggtcatgagaggtcattctttttttcatcaaccattcatgattatttttatttatatgtta |
16520646 |
T |
|
| Q |
119 |
gggtttcatgatggac |
134 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16520647 |
gggtttcatgatggac |
16520662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University