View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_low_6 (Length: 323)
Name: NF17458_low_6
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 12 - 323
Target Start/End: Original strand, 44432220 - 44432536
Alignment:
| Q |
12 |
tgaaatgaatgtagaaccctaactaactaacaaacctgttgtgttgtgaatgaattgtataatagagatatgtggggtagggcgtagtatagtatattca |
111 |
Q |
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| T |
44432220 |
tgaaatgaatgtagaaccctaactaactaacaaacctgttgtgttgtgaatgaattgtataatagagatatgtggggtagggcgtagtatagtatattca |
44432319 |
T |
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| Q |
112 |
aatcaattgtatagtgg-tacaggttcattgatacatacatttggta----agtaagaaaagacaaattaagagcgcgcgaaagagattagaaaatgaag |
206 |
Q |
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| T |
44432320 |
aatcaattgtatagtgggtacaggttcattgatacatacatttggtggtagagtaagaaaagacaaattaagagcgcgcgaaagagattagaaaatgaag |
44432419 |
T |
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| Q |
207 |
aagacaacaacaaaacgcccttccaagaaatcccacgccgccgaaaatggaaacggaaagcctccttccccttctttccaaccgtataatctcattcttc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44432420 |
aagacaacaacaaaacgcccttccaagaaatcccacgccgccgaaaatggaaacggaaagcctccttccccttcttcccaaccgtataatctcattcttc |
44432519 |
T |
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| Q |
307 |
aatcacattcaaatcta |
323 |
Q |
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||||||||||||||||| |
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| T |
44432520 |
aatcacattcaaatcta |
44432536 |
T |
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