View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17458_low_7 (Length: 320)

Name: NF17458_low_7
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17458_low_7
NF17458_low_7
[»] chr6 (23 HSPs)
chr6 (164-307)||(29260194-29260337)
chr6 (164-301)||(1605581-1605718)
chr6 (169-307)||(30734615-30734753)
chr6 (164-307)||(8626484-8626627)
chr6 (168-301)||(13757214-13757347)
chr6 (164-301)||(7761303-7761438)
chr6 (164-301)||(15064832-15064969)
chr6 (177-301)||(31559874-31559998)
chr6 (164-307)||(4129437-4129572)
chr6 (164-307)||(17942445-17942590)
chr6 (164-301)||(8235626-8235763)
chr6 (168-278)||(30734771-30734879)
chr6 (211-299)||(14287038-14287125)
chr6 (164-215)||(19996715-19996766)
chr6 (210-292)||(3798151-3798233)
chr6 (213-299)||(21277574-21277659)
chr6 (213-294)||(11370630-11370711)
chr6 (164-203)||(19996324-19996363)
chr6 (212-299)||(26860819-26860902)
chr6 (220-253)||(33845469-33845502)
chr6 (212-300)||(1814645-1814733)
chr6 (164-200)||(15064697-15064733)
chr6 (164-200)||(17942682-17942718)
[»] chr2 (20 HSPs)
chr2 (164-307)||(1102505-1102648)
chr2 (164-307)||(23366791-23366934)
chr2 (164-307)||(39938172-39938315)
chr2 (164-301)||(3518910-3519047)
chr2 (164-301)||(12969877-12970014)
chr2 (164-289)||(37673887-37674012)
chr2 (190-307)||(1646317-1646432)
chr2 (239-301)||(22388273-22388335)
chr2 (157-215)||(34224378-34224436)
chr2 (210-284)||(35179090-35179164)
chr2 (210-299)||(18078104-18078193)
chr2 (210-299)||(19976380-19976468)
chr2 (221-299)||(14779838-14779914)
chr2 (213-299)||(32840312-32840401)
chr2 (220-289)||(39562037-39562104)
chr2 (172-247)||(1002922-1002997)
chr2 (225-294)||(34242040-34242107)
chr2 (159-200)||(40756908-40756949)
chr2 (162-190)||(5404996-5405024)
chr2 (164-200)||(12969742-12969778)
[»] chr1 (38 HSPs)
chr1 (164-307)||(23045411-23045554)
chr1 (164-307)||(40783789-40783932)
chr1 (164-297)||(284335-284468)
chr1 (164-301)||(321628-321765)
chr1 (164-301)||(24772043-24772180)
chr1 (164-301)||(27211102-27211239)
chr1 (164-301)||(23526242-23526379)
chr1 (159-307)||(47037984-47038130)
chr1 (169-301)||(46771644-46771776)
chr1 (182-301)||(33082765-33082884)
chr1 (177-301)||(52037260-52037382)
chr1 (169-301)||(1749314-1749446)
chr1 (213-290)||(1837978-1838053)
chr1 (221-303)||(7765072-7765154)
chr1 (164-299)||(51064893-51065031)
chr1 (164-215)||(3943062-3943113)
chr1 (164-215)||(9588672-9588723)
chr1 (210-299)||(31003926-31004012)
chr1 (164-215)||(41959080-41959131)
chr1 (210-284)||(3657125-3657199)
chr1 (164-291)||(40261419-40261547)
chr1 (159-215)||(13984991-13985047)
chr1 (221-299)||(18396754-18396832)
chr1 (210-299)||(52478016-52478103)
chr1 (230-299)||(31061594-31061662)
chr1 (222-287)||(40562733-40562797)
chr1 (164-203)||(44227850-44227889)
chr1 (212-299)||(27143151-27143239)
chr1 (176-228)||(40564241-40564293)
chr1 (167-215)||(44228228-44228276)
chr1 (164-203)||(3943763-3943802)
chr1 (164-203)||(41959809-41959848)
chr1 (164-203)||(9589631-9589670)
chr1 (210-245)||(14351954-14351989)
chr1 (230-299)||(24876633-24876699)
chr1 (210-299)||(34458863-34458950)
chr1 (170-215)||(1168369-1168414)
chr1 (254-299)||(37926900-37926945)
[»] chr7 (18 HSPs)
chr7 (164-301)||(10981510-10981647)
chr7 (159-307)||(36453256-36453404)
chr7 (164-307)||(27813813-27813956)
chr7 (164-301)||(40348962-40349099)
chr7 (164-301)||(47110453-47110588)
chr7 (164-307)||(25614485-25614626)
chr7 (210-294)||(3091565-3091649)
chr7 (222-301)||(27942177-27942256)
chr7 (220-291)||(16360442-16360511)
chr7 (212-299)||(16662146-16662231)
chr7 (212-299)||(17636506-17636591)
chr7 (164-215)||(25060133-25060184)
chr7 (220-301)||(3498892-3498973)
chr7 (185-299)||(37983179-37983289)
chr7 (210-294)||(7743542-7743625)
chr7 (164-215)||(2911548-2911599)
chr7 (168-203)||(25059456-25059491)
chr7 (158-190)||(46103597-46103629)
[»] chr4 (29 HSPs)
chr4 (164-301)||(25704653-25704790)
chr4 (164-307)||(24706379-24706522)
chr4 (164-307)||(40122617-40122760)
chr4 (164-301)||(21310427-21310564)
chr4 (164-307)||(14261046-14261189)
chr4 (164-301)||(12071563-12071700)
chr4 (164-301)||(22321405-22321542)
chr4 (19-162)||(29586398-29586546)
chr4 (164-307)||(21661667-21661810)
chr4 (164-307)||(21670431-21670574)
chr4 (164-301)||(34324720-34324858)
chr4 (164-307)||(44568839-44568982)
chr4 (169-307)||(50767871-50768009)
chr4 (168-301)||(20249151-20249283)
chr4 (164-301)||(31892240-31892373)
chr4 (192-278)||(1988065-1988151)
chr4 (210-299)||(20714488-20714577)
chr4 (213-299)||(32543532-32543617)
chr4 (168-291)||(26676714-26676837)
chr4 (212-294)||(6129093-6129175)
chr4 (187-299)||(19692748-19692860)
chr4 (187-299)||(19703333-19703445)
chr4 (230-299)||(18507404-18507472)
chr4 (234-301)||(21064834-21064899)
chr4 (222-277)||(34284179-34284234)
chr4 (177-215)||(19361662-19361700)
chr4 (210-247)||(48652268-48652305)
chr4 (259-299)||(51777715-51777755)
chr4 (169-203)||(19362189-19362223)
[»] scaffold1431 (1 HSPs)
scaffold1431 (168-307)||(31-170)
[»] chr8 (33 HSPs)
chr8 (164-307)||(11174355-11174498)
chr8 (164-307)||(40058435-40058578)
chr8 (167-301)||(2540069-2540203)
chr8 (159-297)||(3585448-3585586)
chr8 (164-307)||(43275531-43275672)
chr8 (164-307)||(11646457-11646600)
chr8 (164-307)||(37345573-37345716)
chr8 (164-307)||(7146915-7147058)
chr8 (164-307)||(40918863-40919004)
chr8 (169-301)||(30999661-30999791)
chr8 (164-307)||(36068082-36068225)
chr8 (164-301)||(27034999-27035135)
chr8 (164-307)||(20546421-20546562)
chr8 (167-294)||(28562426-28562554)
chr8 (210-299)||(28326797-28326883)
chr8 (220-299)||(13881094-13881174)
chr8 (163-299)||(35866615-35866751)
chr8 (164-215)||(8697898-8697949)
chr8 (164-215)||(41307961-41308012)
chr8 (164-215)||(45278701-45278752)
chr8 (167-215)||(10646597-10646645)
chr8 (210-301)||(37510314-37510405)
chr8 (164-215)||(40486453-40486504)
chr8 (167-294)||(28567924-28568051)
chr8 (167-294)||(28575517-28575644)
chr8 (221-294)||(10181002-10181074)
chr8 (212-299)||(30906828-30906917)
chr8 (168-203)||(41305768-41305803)
chr8 (213-291)||(27563999-27564075)
chr8 (155-200)||(40058296-40058341)
chr8 (222-294)||(30268530-30268602)
chr8 (162-190)||(42587248-42587276)
chr8 (171-203)||(45278021-45278053)
[»] chr3 (36 HSPs)
chr3 (164-307)||(13364845-13364988)
chr3 (164-307)||(198857-199000)
chr3 (164-307)||(46694242-46694385)
chr3 (164-307)||(3383078-3383221)
chr3 (164-307)||(19241800-19241943)
chr3 (164-301)||(29375140-29375277)
chr3 (164-307)||(36881284-36881425)
chr3 (164-307)||(23088063-23088206)
chr3 (164-301)||(43750139-43750276)
chr3 (169-266)||(32835129-32835226)
chr3 (164-283)||(13702771-13702890)
chr3 (164-240)||(27707363-27707439)
chr3 (221-294)||(37780996-37781069)
chr3 (164-215)||(12094584-12094635)
chr3 (214-299)||(19897067-19897152)
chr3 (164-215)||(19911511-19911562)
chr3 (164-247)||(37293439-37293522)
chr3 (164-215)||(44277455-44277506)
chr3 (213-290)||(1455297-1455374)
chr3 (250-307)||(27707120-27707177)
chr3 (159-215)||(38805242-38805298)
chr3 (179-247)||(48820444-48820512)
chr3 (169-299)||(53559750-53559880)
chr3 (164-231)||(48963158-48963223)
chr3 (164-203)||(19912174-19912213)
chr3 (164-203)||(38806341-38806380)
chr3 (212-290)||(44522491-44522567)
chr3 (221-299)||(24064283-24064361)
chr3 (210-307)||(26105079-26105176)
chr3 (185-299)||(54086577-54086690)
chr3 (154-203)||(12095423-12095472)
chr3 (171-215)||(4235760-4235803)
chr3 (172-299)||(18356007-18356134)
chr3 (168-203)||(44276781-44276816)
chr3 (221-299)||(52805166-52805244)
chr3 (171-215)||(4226716-4226759)
[»] chr5 (21 HSPs)
chr5 (159-301)||(12806991-12807133)
chr5 (164-301)||(25773651-25773788)
chr5 (164-307)||(30720624-30720767)
chr5 (164-307)||(10285189-10285332)
chr5 (164-307)||(36561231-36561374)
chr5 (164-307)||(40886742-40886885)
chr5 (164-301)||(37900762-37900899)
chr5 (173-301)||(7277560-7277688)
chr5 (200-301)||(25683366-25683467)
chr5 (164-296)||(16983260-16983393)
chr5 (212-287)||(23098386-23098461)
chr5 (165-299)||(734478-734611)
chr5 (210-299)||(30403101-30403191)
chr5 (164-299)||(39070885-39071020)
chr5 (167-299)||(11319564-11319696)
chr5 (164-211)||(15305216-15305263)
chr5 (221-299)||(16054173-16054249)
chr5 (222-299)||(1056422-1056498)
chr5 (164-203)||(15304824-15304863)
chr5 (164-270)||(11796453-11796559)
chr5 (164-200)||(25683231-25683267)
[»] scaffold0054 (1 HSPs)
scaffold0054 (164-301)||(45456-45593)
[»] scaffold1770 (1 HSPs)
scaffold1770 (164-307)||(172-307)
[»] scaffold0062 (1 HSPs)
scaffold0062 (177-301)||(403-525)
[»] scaffold0056 (1 HSPs)
scaffold0056 (212-299)||(70874-70961)
[»] scaffold0257 (2 HSPs)
scaffold0257 (164-215)||(23469-23520)
scaffold0257 (155-203)||(23872-23920)
[»] scaffold0025 (1 HSPs)
scaffold0025 (228-301)||(65301-65375)
[»] scaffold0076 (1 HSPs)
scaffold0076 (213-294)||(15465-15551)


Alignment Details
Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 29260194 - 29260337
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29260194 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 29260293  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  29260294 tataatacccttaatcatttattatttcattttatttttttctc 29260337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 1605581 - 1605718
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605581 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 1605680  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  1605681 tataatacccttaatcatttattatttcattttatttt 1605718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 169 - 307
Target Start/End: Complemental strand, 30734753 - 30734615
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30734753 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 30734654  T
Q  269 tacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  30734653 tacccttaatcatttattatttcattttatttttttctc 30734615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 8626484 - 8626627
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8626484 ctccctccgtttcaaaatacatgtccattttgaagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 8626583  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  8626584 tataatacccttaatcatttattatttcattttatttttttctc 8626627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 13757214 - 13757347
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 267  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13757214 ctccgtttcaaaatacatgtccattttggagaaattacactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 13757313  T
Q  268 atacccttaaccatttattatttcattttatttt 301  Q
    |||||||||| || ||||||||||||||||||||    
T  13757314 atacccttaatcaattattatttcattttatttt 13757347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 7761303 - 7761438
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  7761303 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgttttc 7761400  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  7761401 tataatacccttaatcatttattatttcattttatttt 7761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 15064969 - 15064832
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  15064969 ctccctccgtttcaaaatacatgtccattttagagaaattgcagcaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgttttt 15064870  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||| |||||||||||||||||||||| ||| ||||||    
T  15064869 tatactacccttaaccatttattatttgattatatttt 15064832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 31559998 - 31559874
Alignment:
Q  177 aaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataataccctta 276  Q
    |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  31559998 aaaatacatgtccattttggagaaattgcattaaccaaaaaatcaaataaattttgttatttttgatgaaaatatgtgtatgttttctgtaataccctta 31559899  T
Q  277 accatttattatttcattttatttt 301  Q
    | |||||||||||||||||| ||||    
T  31559898 atcatttattatttcattttttttt 31559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 4129437 - 4129572
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||| |||| ||||||||||||||| |||||        |||||||||||||||||||| ||||||||||||||||||||||    
T  4129437 ctccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgttttc 4129528  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  4129529 tataatacccttaaccatttattatttcattttatttttttctc 4129572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 17942445 - 17942590
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgtt--atttttgatgaaaatatgtgtgtgttt 261  Q
    |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||  |||| ||  ||||||||||||| |||||| |||||     
T  17942445 ctcccttcgtttcaaaatacatgtccatttttgagaaattgcagtaaccaagaaaccaaatatttttttttttatttttgatgaaattatgtgcgtgttc 17942544  T
Q  262 tctataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  17942545 tctataatacccttaaccatttattatttcattttatttttttctc 17942590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 8235626 - 8235763
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||  ||| ||||||||||| ||||||| |||||||||| |||||||||||| ||||||| |||||||||||| |||| | |||||||||||||||    
T  8235626 ctccctctattttaaaatacatgtacattttgaagaaattgcagtaaccaagaaacgaaataaaatttgttattttttatgatattatgtgtgtgttttc 8235725  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  8235726 tataatacccttaatcatttattatttcattctatttt 8235763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 30734879 - 30734771
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 267  Q
    |||||||||||||||||||||||||||| |||||||||| |||| || ||| |||||||||||||||||||||||||||| ||  |||||||||||||||    
T  30734879 ctccgtttcaaaatacatgtccattttgaagaaattgcagtaacaaaaaaatcaaataaattttgttatttttgatgaaatta--tgtgtgttttctata 30734782  T
Q  268 atacccttaac 278  Q
    |||||||||||    
T  30734781 atacccttaac 30734771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 14287038 - 14287125
Alignment:
Q  211 ccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||| ||| ||||||||||||||||||||| |||||| | ||||  | |||||||||||||||||| || |||||||||||||||||||    
T  14287038 ccaataaatcaaataaattttgttattttttatgaaattctgtgctt-ttttctataatacccttacccctttattatttcattttatt 14287125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 19996766 - 19996715
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19996766 ctccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 19996715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 3798151 - 3798233
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttca 292  Q
    ||||| ||| ||||||||||||||||||||| |||||  ||| ||||| |||||||||| |||||||  ||||||||||||||    
T  3798151 accaaaaaatcaaataaattttgttatttttcatgaagttatttgtgttttttctataacacccttacacatttattatttca 3798233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 21277659 - 21277574
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||| |||||||||||||||||||  ||||| || |||||| ||||    
T  21277659 aagaaatcaaataaattttgttattttttatgaaaatttatgtgt-ttttctataatacccttaattatttagtacttcattctatt 21277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 11370711 - 11370630
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    |||||| |||||||||||||||||||||||||| | |   ||||| |||| |||||||| ||||||||||||||||| ||||    
T  11370711 aagaaatcaaataaattttgttatttttgatgatattcattgtgttttttttataatactcttaaccatttattattccatt 11370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 19996324 - 19996363
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  19996324 ctccctccgtttcaaaatacatgtccattttagagaaatt 19996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 26860819 - 26860902
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||| ||||||| |||| |||||||||||||||   | ||||| | |||||||  ||||||||||||||||||||| ||| ||||    
T  26860819 caagaaatcaaataactttttttatttttgatgaaa--ttttgtgtttattctata--acccttaaccatttattattttattctatt 26860902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 33845502 - 33845469
Alignment:
Q  220 caaataaattttgttatttttgatgaaaatatgt 253  Q
    |||||||||||||||||||||||||||| |||||    
T  33845502 caaataaattttgttatttttgatgaaattatgt 33845469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 1814645 - 1814733
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattt 300  Q
    ||||||| |||||||| ||||||||||||||||||| | |  |||| ||| ||||||  ||||||||  ||| |||||| ||| |||||    
T  1814645 caagaaatcaaataaactttgttatttttgatgaaattcttcgtgtttttcctataacgcccttaactttttgttattttattctattt 1814733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 15064697 - 15064733
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaa 200  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  15064697 ctccctccgtttcataatacttgtccattttggagaa 15064733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 17942718 - 17942682
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaa 200  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  17942718 ctccctccgtttcataatacttgtccattttggagaa 17942682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 1102505 - 1102648
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1102505 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 1102604  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1102605 tataatacccttaaccatttattatttcattttatttttttctc 1102648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 23366791 - 23366934
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23366791 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttc 23366890  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  23366891 tataatacccttaatcatttattatttcattttatttttttctc 23366934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 39938172 - 39938315
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39938172 ctccctccgtttcaaaatacatgaccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 39938271  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  39938272 tataatacccttaatcatttattatttcattttatttttttctc 39938315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 3518910 - 3519047
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3518910 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 3519009  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  3519010 tataatacccttaataatttattatttcattttatttt 3519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 12970014 - 12969877
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||    
T  12970014 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtatattttc 12969915  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  12969914 tataatacccttaaccatttattattttattctatttt 12969877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 37674012 - 37673887
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37674012 ctccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 37673913  T
Q  264 tataatacccttaaccatttattatt 289  Q
    |||||||||||||| |||||||||||    
T  37673912 tataatacccttaatcatttattatt 37673887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 1646317 - 1646432
Alignment:
Q  190 attttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatt 289  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||    
T  1646317 attttggagaaattgcagcaaccaagaaactaaataaattttgttatttttgatgaaaata--tgtgtgttttctataatacccttaatcatttattatt 1646414  T
Q  290 tcattttattttcttctc 307  Q
    |||||||||||| |||||    
T  1646415 tcattttatttttttctc 1646432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 22388335 - 22388273
Alignment:
Q  239 ttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22388335 ttgatgaaaatatgtgtgtgttttctataatacccttaatcatttattatttcattttatttt 22388273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 34224436 - 34224378
Alignment:
Q  157 actactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  34224436 actactactccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 34224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Complemental strand, 35179164 - 35179090
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccattta 284  Q
    |||||||||  ||||||||||||||||||||||||||| | ||||||| |||||||||||| ||||||| |||||    
T  35179164 accaagaaatgaaataaattttgttatttttgatgaaattttgtgtgttttttctataataaccttaactattta 35179090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 18078104 - 18078193
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||| ||| |||||||||||||||||||||||||||  | | ||||  ||||||||||||| ||| ||||||||||| |||||| ||||    
T  18078104 accaaaaaatcaaataaattttgttatttttgatgaatttttttgtggattttctataatactcttgaccatttattaattcattctatt 18078193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 19976380 - 19976468
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||| ||||||||||||| || ||||||| ||| ||||||| | |||||||||||||||||| | ||||||||||| ||| ||||    
T  19976380 accaagaaatcaaataaattttggtacttttgataaaattatgtgt-ttttttctataatacccttacctatttattattttattatatt 19976468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 14779838 - 14779914
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||| ||||||||||||||| ||| ||||| ||||||||||||  ||||  |||||||||||||||| ||||    
T  14779838 aaataaatttttttatttttgatgaaattatttgtgttttttctataata--cttactcatttattatttcattatatt 14779914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 32840401 - 32840312
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgt---tttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||| |||||||||||||||||||||||||||| | ||||| | |   ||||||||||||| ||| | ||||||||||||||| ||||    
T  32840401 aagaaatcaaataaattttgttatttttgatgaaattctgtgtttttttctttctataataccattatcgatttattatttcattctatt 32840312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 39562104 - 39562037
Alignment:
Q  220 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatt 289  Q
    ||||||||||||||||||||||| |||| ||| | ||| |||||  ||||||||||||||||||||||||    
T  39562104 caaataaattttgttatttttgaagaaattatttttgttttttc--taatacccttaaccatttattatt 39562037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 1002997 - 1002922
Alignment:
Q  172 gtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa 247  Q
    |||||||||||||||||  |||||  || ||| |||  || |||||| |||||||||||| |||||||||||||||    
T  1002997 gtttcaaaatacatgtcgcttttgaggatattacacatactaagaaatcaaataaattttattatttttgatgaaa 1002922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 34242040 - 34242107
Alignment:
Q  225 aaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    |||||||||||||||||||||||   | ||||| |||| | ||| ||||||| |||||||||||||||||    
T  34242040 aaattttgttatttttgatgaaa--ttctgtgttttttttgtaacacccttacccatttattatttcatt 34242107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 40756908 - 40756949
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaa 200  Q
    |||| |||||||||||||| ||||| ||||||||||||||||    
T  40756908 tactactccctccgtttcataatacttgtccattttggagaa 40756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 5404996 - 5405024
Alignment:
Q  162 tgctccctccgtttcaaaatacatgtcca 190  Q
    |||||||||||||||||||||||||||||    
T  5404996 tgctccctccgtttcaaaatacatgtcca 5405024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 12969742 - 12969778
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaa 200  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  12969742 ctccctccgtttcataatacttgtccattttggagaa 12969778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 23045554 - 23045411
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23045554 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 23045455  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  23045454 tataatacccttaatcatttattatttcattttatttttttctc 23045411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 40783932 - 40783789
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40783932 ctccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 40783833  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  40783832 tataatacccttaatcatttattatttcattttatttttttctc 40783789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 164 - 297
Target Start/End: Original strand, 284335 - 284468
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  284335 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttc 284434  T
Q  264 tataatacccttaaccatttattatttcatttta 297  Q
    |||||||||||||| |||||||||||||||||||    
T  284435 tataatacccttaatcatttattatttcatttta 284468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 321628 - 321765
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  321628 ctccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 321727  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  321728 tataatatccttaatcatttattatttcattttatttt 321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 24772180 - 24772043
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  24772180 ctccctccgtttcaaaatacatgtccattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttc 24772081  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  24772080 tataatacccttaaccatttattattttattctatttt 24772043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 27211239 - 27211102
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  27211239 ctccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaccaaataaattttgttatttttgaggaaattatatgtgtgttttc 27211140  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  27211139 tataatacccttaaccatttattattttattctatttt 27211102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 23526242 - 23526379
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| ||| ||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23526242 ctccttccatttcaaaatacatgttcattttggagaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtgttttc 23526341  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  23526342 tataatacccttaaccatttattatttcattctatttt 23526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 159 - 307
Target Start/End: Complemental strand, 47038130 - 47037984
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 258  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||  |||    
T  47038130 tactactccatccgtttcaaaatacatgtccattttggagaaattgtactaactaagaaatcaaataaattttgttatttttgatgaaaatatgt--gtg 47038033  T
Q  259 ttttctataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  47038032 ttttctataatacccttaatcatttattatttcattttatttttttctc 47037984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 46771644 - 46771776
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 268  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46771644 tccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaattaaataaattttgttatttttgatgaaattatgtgtgtgttttctataa 46771743  T
Q  269 tacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||||||| ||||||| ||||||    
T  46771744 tacccttaaccatttattttttcattctatttt 46771776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 182 - 301
Target Start/End: Original strand, 33082765 - 33082884
Alignment:
Q  182 acatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccat 281  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  33082765 acatgtctattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaattatgtgtgtattttctataatacccttaaccat 33082864  T
Q  282 ttattatttcattttatttt 301  Q
    ||||||||| ||| ||||||    
T  33082865 ttattattttattctatttt 33082884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 52037382 - 52037260
Alignment:
Q  177 aaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataataccctta 276  Q
    |||||||||||||||||| ||||||||||| || |||| |||||||||||||||| ||||||||||| ||| ||  ||||||||||||||||||| ||||    
T  52037382 aaaatacatgtccattttagagaaattgcattatccaaaaaaccaaataaattttattatttttgataaaatta--tgtgtgttttctataatactctta 52037285  T
Q  277 accatttattatttcattttatttt 301  Q
    |||||||||||||||||| ||||||    
T  52037284 accatttattatttcattctatttt 52037260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 1749314 - 1749446
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 268  Q
    ||||||| ||||||||| |||||||   | ||||  || ||| ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  1749314 tccgttttaaaatacatttccatttaaaaaaaatcacagtaatcaagaaatcaaataaattttgttatttttgatgaaattatatgtgtgttttctataa 1749413  T
Q  269 tacccttaaccatttattatttcattttatttt 301  Q
    || | ||||||||||||||||| ||| ||||||    
T  1749414 tagcattaaccatttattattttattctatttt 1749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 1838053 - 1837978
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattattt 290  Q
    |||||| |||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||| |||||||||||||    
T  1838053 aagaaatcaaataaattttgttatttttgatgaaatta--tgtgttttttctataatacccttacccatttattattt 1837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 221 - 303
Target Start/End: Original strand, 7765072 - 7765154
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttattttct 303  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||  |||||||| |||||||||||||||| ||||| ||||||    
T  7765072 aaataaattttgttatttttggtgaaattatatgtgtgttttccgtaatacccataaccatttattatttaatttttttttct 7765154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 299
Target Start/End: Complemental strand, 51065031 - 51064893
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||| ||||| ||||||||||  ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | | ||||| |||||    
T  51065031 ctccctccgtttcacaatacttgtccattttaaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgttttttc 51064932  T
Q  264 tat---aatacccttaaccatttattatttcattttatt 299  Q
    |||   ||||||||||  | |||||||||||||| ||||    
T  51064931 tataataatacccttactcgtttattatttcattatatt 51064893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 3943062 - 3943113
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3943062 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 3943113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 9588672 - 9588723
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9588672 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 9588723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 31004012 - 31003926
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||| ||||||||||||   |||||| |||||| ||||||| | |||||||||||||||||||||||||||||||| ||| ||||    
T  31004012 accaagaaatcaaataaatttt---atttttaatgaaagtatgtgtattttttctataatacccttaaccatttattatttaattctatt 31003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 41959080 - 41959131
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41959080 ctccctccgtttcaaaatacatgtccattttggagaaattgcaataaccaag 41959131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 3657125 - 3657199
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccattta 284  Q
    ||||||||| ||||||||||||||||||||| |||||| | ||| ||| |||||||||||| |||||||||||||    
T  3657125 accaagaaatcaaataaattttgttatttttaatgaaattttgtatgttttttctataataaccttaaccattta 3657199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 40261547 - 40261419
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattg-cactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg-tgttt 261  Q
    |||||||||||||| |||||||||   ||||| |||||||  |||  ||||||||| |||||||||||||||| ||||||||||| |  ||||| | |||    
T  40261547 ctccctccgtttcacaatacatgttgcttttg-agaaatttacacataccaagaaatcaaataaattttgttaattttgatgaaattgcgtgtgtttttt 40261449  T
Q  262 tctataatacccttaaccatttattatttc 291  Q
    ||||||||| | ||||||||||||||||||    
T  40261448 tctataatatcattaaccatttattatttc 40261419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 13985047 - 13984991
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  13985047 tactactccatccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 13984991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 18396754 - 18396832
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||||||| |||||| ||||||||  ||||||||||||   ||||||||| ||||||||||| ||||    
T  18396754 aaataaattttgttattttttatgaaattatgtgtggtttttctataatatatttaaccattcattatttcattctatt 18396832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 52478016 - 52478103
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||| ||||||||||||||||||||||||||||   | ||||| |||||||||||| ||||||  |||||| |||||||| ||||    
T  52478016 accaagaaatcaaataaattttgttatttttgatgaaa--ttttgtgttttttctataataaccttaaaaatttatcatttcattctatt 52478103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 31061662 - 31061594
Alignment:
Q  230 ttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||| |||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| ||||    
T  31061662 ttgttattttttatgaaattatgtgtgttttttccataataccc-taaccatttattatttcattatatt 31061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 40562797 - 40562733
Alignment:
Q  222 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttatta 287  Q
    |||||||||||||||||||||| ||| ||| | |||||||||||||||||| ||||||||||||||    
T  40562797 aataaattttgttatttttgat-aaattatatatgtgttttctataataccattaaccatttatta 40562733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 44227850 - 44227889
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44227850 ctccctccgtttcaaaatacatgtccattttggagaaatt 44227889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 27143239 - 27143151
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtg-tgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||| ||||||||||||||||||||||| |||| |  ||| | | ||||||||||||  ||||| |||||||||||||||| ||||    
T  27143239 caagaaatcaaataaattttgttatttttgaggaaattccgtgagtttttttctataatattcttaatcatttattatttcattctatt 27143151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 40564293 - 40564241
Alignment:
Q  176 caaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaat 228  Q
    ||||||| |||||||||||||| |||| ||| |||||||||||||||||||||    
T  40564293 caaaatatatgtccattttggaaaaatcgcagtaaccaagaaaccaaataaat 40564241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 44228276 - 44228228
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||||||    
T  44228276 cctccatttcaaaatacatgtccattttggagaaattgctgtaaccaag 44228228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 3943802 - 3943763
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  3943802 ctccctccgtttcaaaatacatgtccattttagagaaatt 3943763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 41959848 - 41959809
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  41959848 ctccctccgtttcaaaatacatgtccattttagagaaatt 41959809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 9589670 - 9589631
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||| ||||| ||||||||    
T  9589670 ctccctccgtttcaaaatacatgtctattttagagaaatt 9589631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 14351989 - 14351954
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatga 245  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14351989 accaagaaaacaaataaattttgttatttttgatga 14351954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 24876633 - 24876699
Alignment:
Q  230 ttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||| | |||||||   |||||||||||||| || ||||||||| |||||||| ||||    
T  24876633 ttgttatttttgatgatattatgtgt---ttttctataatacctttgaccatttatcatttcattctatt 24876699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 34458950 - 34458863
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||| ||||||||||||  ||||||| |||||| | ||||| |  ||||||||||| |||||   ||||||||||||||| ||||    
T  34458950 accaagaaatcaaataaatttttctattttttatgaaattctgtgttt--tttctataataaccttactaatttattatttcattctatt 34458863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 1168369 - 1168414
Alignment:
Q  170 ccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||||||||||||||||  ||||| |||||||||| ||||||||    
T  1168369 ccgtttcaaaatacatgtcgtttttgaagaaattgcagtaaccaag 1168414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 37926900 - 37926945
Alignment:
Q  254 gtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||| ||||||||||||||||| || |||||||| |||||||||||    
T  37926900 gtgttttttctataatacccttgacaatttattacttcattttatt 37926945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 10981510 - 10981647
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10981510 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 10981609  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10981610 tataatacccttaatcatttattatttcattttatttt 10981647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 159 - 307
Target Start/End: Complemental strand, 36453404 - 36453256
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  36453404 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtt 36453305  T
Q  259 ttttctataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  36453304 ttttctataatacccttaatcatttattatttcattttatttttttctc 36453256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 27813813 - 27813956
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27813813 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtatgtgttttc 27813912  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  27813913 tataatacccttaatcatttattatttcattttatttttttctc 27813956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 40348962 - 40349099
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40348962 ctccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 40349061  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  40349062 tataatacccttaatcatttattatttcattttatttt 40349099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 47110453 - 47110588
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  47110453 ctccctccatttcaaaatacatgtccattttggagaaattgcactaaccaagaaacaaaataaattttgttatttttgatgaaaata--tgtgtgttttc 47110550  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  47110551 tataatacccttaatcatttattattttattttatttt 47110588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 25614626 - 25614485
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||    
T  25614626 ctccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttc 25614529  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |  ||||||||||| ||||||||||||||||||||||| |||||    
T  25614528 tgaaatacccttaatcatttattatttcattttatttttttctc 25614485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 3091565 - 3091649
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    ||||| ||| |||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||||||||||||||||    
T  3091565 accaaaaaatcaaataaattttgttatttttgatgaaattctttgtgttttttctataatacccttaaccatttattatttcatt 3091649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 27942256 - 27942177
Alignment:
Q  222 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||| |||||||| |||| | ||||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  27942256 aataaatttttttatttttaatgagattatgtgtgttttttctataatacctttaaccatttattatttcattctatttt 27942177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 16360442 - 16360511
Alignment:
Q  220 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttc 291  Q
    |||||||||||||||||||||||||||| | ||||| |  ||||||||||||||||||||||||||||||||    
T  16360442 caaataaattttgttatttttgatgaaattctgtgttt--tttctataatacccttaaccatttattatttc 16360511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 16662146 - 16662231
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||  |||||||||||||||||||||||||||  || ||||| |||| ||||||||||||||||||||||||||| ||| ||||    
T  16662146 caagaaataaaataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattttattatatt 16662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 17636506 - 17636591
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||  |||||||||||||||||||||||||||  || ||||| |||| ||||||||||||||||||||||||||| ||| ||||    
T  17636506 caagaaataaaataaattttgttatttttgatgaaa--atttgtgttttttttataatacccttaaccatttattattttattatatt 17636591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 25060184 - 25060133
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25060184 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 25060133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 3498973 - 3498892
Alignment:
Q  220 caaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatttt 301  Q
    ||||| ||||||||||||||| |||||| | | ||| | |||||||||||||  ||||||||||||||||||||||||||||    
T  3498973 caaattaattttgttattttttatgaaattttttgtatcttttctataatacttttaaccatttattatttcattttatttt 3498892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 37983179 - 37983289
Alignment:
Q  185 tgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccattta 284  Q
    |||||||||||  |||||| |||  | ||||||| ||||||||||||||||||||||||||||     | | |||||| ||||||||| |||||||||||    
T  37983179 tgtccattttgaggaaattacacatatcaagaaatcaaataaattttgttatttttgatgaaa----ttttatgttttttataatacctttaaccattta 37983274  T
Q  285 ttatttcattttatt 299  Q
    |||||||||| ||||    
T  37983275 ttatttcattatatt 37983289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 294
Target Start/End: Complemental strand, 7743625 - 7743542
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||| |  ||||||||||||| ||||  |||||||||||||||    
T  7743625 accaagatatcaaataaattttgttatttttgatgaaattatgtgt-ttctttctataataccgttaattatttattatttcatt 7743542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 2911599 - 2911548
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  2911599 ctccctccatttcaaaatacatgtccattttggagaaattgcagtaaccaag 2911548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 25059456 - 25059491
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||| ||||||||    
T  25059456 ctccgtttcaaaatacatgtccattttagagaaatt 25059491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 46103629 - 46103597
Alignment:
Q  158 ctactgctccctccgtttcaaaatacatgtcca 190  Q
    ||||| |||||||||||||||||||||||||||    
T  46103629 ctactactccctccgtttcaaaatacatgtcca 46103597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 25704653 - 25704790
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25704653 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 25704752  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25704753 tataatacccttaatcatttattatttcattttatttt 25704790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 24706522 - 24706379
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24706522 ctccatccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 24706423  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  24706422 tataatacccttaatcatttattatttcattttatttttttctc 24706379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 40122760 - 40122617
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40122760 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaaaaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 40122661  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  40122660 tataatacccttaaccatttattatttcattttatttttttctc 40122617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 21310427 - 21310564
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21310427 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 21310526  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  21310527 tataatacccttaatcatttattatttcattttttttt 21310564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 14261046 - 14261189
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14261046 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgataaaaatatgtgtgtgttttc 14261145  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||||||||  |||||||||||||||||||||| |||||    
T  14261146 tataatacccttaataatttattatttcattttatttttttctc 14261189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 12071563 - 12071700
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  12071563 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaataaactaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 12071662  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  12071663 tataatacccttaatcatttattatttcattttatttt 12071700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 22321542 - 22321405
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22321542 ctccttccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttc 22321443  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  22321442 tataatacccttaatcatttattatttcattttatttt 22321405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 29586546 - 29586398
Alignment:
Q  19 gtagccgatggctcagagccagctacaagtattacctgcataattattttgacatatgtggtgaattgtta-----attcaagattatgtagcacctttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| |||    
T  29586546 gtagccgatggctcagagccagctacaagtattacctgcataattattttgacatatgtggtgaattgttatgttaattcaagattatgtagcaccattt 29586447  T
Q  114 tcatatctaaaaactaggcaaaattaattgaagcaattgttaaactact 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29586446 tcatatctaaaaactaggcaaaattaattgaagcaattgttaaactact 29586398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 21661810 - 21661667
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21661810 ctccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttattatttttgatgaaaatatgtgtgtgttttc 21661711  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  21661710 tataatacctttaaccatttattatttcattttatttttttctc 21661667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 21670574 - 21670431
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21670574 ctccctccctttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaatttttttatttttgatgaaaatatgtgtgtgttttc 21670475  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  21670474 tataatacctttaaccatttattatttcattttatttttttctc 21670431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 34324858 - 34324720
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaat-aaattttgttatttttgatgaaaatatgtgtgtgtttt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  34324858 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaactaaattaaattttgttatttttgatgaaaatatgtgtgtgtttt 34324759  T
Q  263 ctataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  34324758 ctataatacccttaatcatttattatttcattttatttt 34324720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 44568839 - 44568982
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44568839 ctccttccgtttcaaaatacatgtccattttgaagaaattgcactaaccaaaaaaccaaataaattttgttattttttatgaaaatatgtgtgtgttttc 44568938  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  44568939 tataatacccttaatcatttattatttcattttatttttttctc 44568982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 169 - 307
Target Start/End: Original strand, 50767871 - 50768009
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 268  Q
    ||||||||||||||||| | |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50767871 tccgtttcaaaatacatattcattttagagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttctataa 50767970  T
Q  269 tacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||  |||||||||||||||||||||| |||||    
T  50767971 tacccttaataatttattatttcattttatttttttctc 50768009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 168 - 301
Target Start/End: Complemental strand, 20249283 - 20249151
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 267  Q
    |||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||    
T  20249283 ctccgtttcaaaatacatgtccattttggataaattgtattaaccaagaaaccaaataaattttgttatttttgaagaaattatgtgtgtg-tttctata 20249185  T
Q  268 atacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||| ||| ||||||    
T  20249184 atacccttaaccatttattattttattctatttt 20249151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 31892240 - 31892373
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||| ||||||||||||| ||||||  |||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||    |||||||||    
T  31892240 ctccctccgtatcaaaatacatgttcattttaaagaaattgcagtaaccaagaaatcaaataaattttattatttttgatgaaatta----tgtgttttc 31892335  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||| || |||||||||||||||||| ||||||    
T  31892336 tataatacctttgaccatttattatttcattctatttt 31892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 1988065 - 1988151
Alignment:
Q  192 tttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaac 278  Q
    ||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  1988065 tttggagaaattgcagtaactaagaaatcaaataaattttattatttttgatgaaattatgtatgtgttttctataatacccttaac 1988151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 20714577 - 20714488
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg-ttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||| ||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  20714577 accaataaatcaaataaattttgttatttttgatgaaactatgtgtgtgtttttctataata-ccttaaccatttattatttcattatatt 20714488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 32543532 - 32543617
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||| |||||||| ||||||||||| | | ||||| |||| |||||||||||||| |||||||||||||||||||||    
T  32543532 aagaaaccaaataatttttgttaattttgatgaaattctttgtgtttttt-tataatacccttaatcatttattatttcattttatt 32543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 26676837 - 26676714
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 267  Q
    |||||||||| ||||| | ||||||||| ||||||| |||  |||||| || ||||||||| |||| |||||| |||||| | |  |||| |||||||||    
T  26676837 ctccgtttcacaatacttatccattttgaagaaattacacataccaaggaatcaaataaatgttgtcattttttatgaaattcttcgtgttttttctata 26676738  T
Q  268 atacccttaaccatttattatttc 291  Q
    |||||||||  |||||||||||||    
T  26676737 atacccttactcatttattatttc 26676714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 6129175 - 6129093
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    ||||||| |||||||||||||||||||||||| ||| | | ||| | ||||||| ||||||||||| ||||||||||||||||    
T  6129175 caagaaatcaaataaattttgttatttttgataaaattctttgtattttttctacaatacccttaatcatttattatttcatt 6129093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 19692748 - 19692860
Alignment:
Q  187 tccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttatt 286  Q
    ||||||||| |||||||  ||  ||||||||| ||||||||| |||| |||||| |||||| | | ||||| |||||||||||| |||||  ||||||||    
T  19692748 tccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttatt 19692847  T
Q  287 atttcattttatt 299  Q
    |||||||| ||||    
T  19692848 atttcattctatt 19692860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 19703333 - 19703445
Alignment:
Q  187 tccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttatt 286  Q
    ||||||||| |||||||  ||  ||||||||| ||||||||| |||| |||||| |||||| | | ||||| |||||||||||| |||||  ||||||||    
T  19703333 tccattttgaagaaattatacataccaagaaatcaaataaatgttgtcattttttatgaaattctttgtgttttttctataatatccttactcatttatt 19703432  T
Q  287 atttcattttatt 299  Q
    |||||||| ||||    
T  19703433 atttcattctatt 19703445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 18507472 - 18507404
Alignment:
Q  230 ttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||||| | ||||||| |||||||||||| |||| || ||||||||||||||| ||||    
T  18507472 ttgttatttttgatgaaattttgtgtgttttttctataata-ccttgacaatttattatttcattatatt 18507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 301
Target Start/End: Original strand, 21064834 - 21064899
Alignment:
Q  234 tatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| ||||||||| ||||  ||||||| |||||| ||||||||||||||| ||||||    
T  21064834 tatttttgatgaaattatgtgtgtttttt--ataatactcttaactatttattatttcattctatttt 21064899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Complemental strand, 34284234 - 34284179
Alignment:
Q  222 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaa 277  Q
    |||||||||||||| ||||||||||| ||| ||| | |||||||||||||||||||    
T  34284234 aataaattttgttacttttgatgaaactatttgtattttttctataatacccttaa 34284179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 19361662 - 19361700
Alignment:
Q  177 aaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  19361662 aaaatacatgtccattttggagaaattgcagtaaccaag 19361700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 48652268 - 48652305
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaa 247  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  48652268 accaagaaatcaaataaattttgttatttttgatgaaa 48652305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 51777715 - 51777755
Alignment:
Q  259 ttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  51777715 ttttctataatactcttaaccatttattatttcatgttatt 51777755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 19362223 - 19362189
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaatt 203  Q
    |||||||||||||||||||||||||| ||||||||    
T  19362223 tccgtttcaaaatacatgtccattttagagaaatt 19362189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1431 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold1431
Description:

Target: scaffold1431; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 168 - 307
Target Start/End: Complemental strand, 170 - 31
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  170 ctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctata 71  T
Q  268 atacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  70 atacccttaatcatttattatttcattttatttttttctc 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 11174498 - 11174355
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11174498 ctccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 11174399  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  11174398 tataatacccttaatcatttattatttcattttatttttttctc 11174355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 40058578 - 40058435
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40058578 ctccctccgtttcaaaatacatgtccatttcggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 40058479  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  40058478 tataatacccttaatcatttattatttcattttatttttttctc 40058435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 167 - 301
Target Start/End: Complemental strand, 2540203 - 2540069
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2540203 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 2540104  T
Q  267 aatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||| |||||||||||||||||||||||    
T  2540103 aatacccttaatcatttattatttcattttatttt 2540069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 3585448 - 3585586
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 258  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3585448 tactactccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtg 3585547  T
Q  259 ttttctataatacccttaaccatttattatttcatttta 297  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  3585548 ttttctataatacccttaatcatttattatttcatttta 3585586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 43275672 - 43275531
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  43275672 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttc 43275575  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  43275574 tataatacccttaatcatttattatttcattttatttttttctc 43275531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 11646600 - 11646457
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11646600 ctcccttcgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttc 11646501  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||    
T  11646500 tataatacccttaatcatttattatttcattttacttttttctc 11646457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 37345573 - 37345716
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37345573 ctccctccgtttcaaaatacatgtccattttgaagaaattgcaccaaccaagaaaccaaataaattttgttatttttaatgaaaatatgtgtgtgttttc 37345672  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  37345673 tataatacccttaatcatttattatttcattttatttttttctc 37345716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 7146915 - 7147058
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7146915 ctccttccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt 7147014  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  7147015 tataatacccttaatcatttattatttcattttatttttttctc 7147058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 40919004 - 40918863
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||||||    
T  40919004 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttttatgaaaaca--tgtgtgttttc 40918907  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  40918906 tataatacccttaatcatttattatttcattttatttttttctc 40918863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 30999791 - 30999661
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 268  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30999791 tccgtttcaaaatacatgtcaattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgttttctataa 30999694  T
Q  269 tacccttaaccatttattatttcattttatttt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  30999693 tacccttaatcatttattatttcattttatttt 30999661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 36068082 - 36068225
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||    
T  36068082 ctccctccgtttcaaaatacatgtccattttggaggaattgtactaaccaaaaaaccaaataaattttgttatttttaatgaaaatatatgtgtgttttc 36068181  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| |||| |||||||||||||| ||| |||||    
T  36068182 tataatacccttaatcattaattatttcattttacttttttctc 36068225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 27034999 - 27035135
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||| |||| ||||    
T  27034999 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttatttttgatgaaattatgtctgtg-tttc 27035097  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  27035098 tataatacccttaaccatttattatttcattctatttt 27035135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 20546562 - 20546421
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||| |||||||||| |||||||||||| ||||||||||  || |||||||  ||||||||||||||||||||||||||| ||  ||||||||||     
T  20546562 ctccctccatttcaaaatatatgtccattttgaagaaattgcaacaatcaagaaattaaataaattttgttatttttgatgaaatta--tgtgtgtttta 20546465  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||| ||||||||||| ||||||||||||||| |||||| |||||    
T  20546464 tatgatacccttaacaatttattatttcattatatttttttctc 20546421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 28562426 - 28562554
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtg-tgttttcta 265  Q
    ||||||||||||||||| ||||||||||| ||||||| |||  |||||| || ||||||||| |||| ||||||||||||| | | |||| | |||||||    
T  28562426 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaattctttgtgtttttttcta 28562525  T
Q  266 taatacccttaaccatttattatttcatt 294  Q
    |||||||||||  ||||||| ||||||||    
T  28562526 taatacccttactcatttatgatttcatt 28562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 28326883 - 28326797
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||   ||||| ||||||| |||||| ||||||||||||||| ||||    
T  28326883 accaagaaatcaaataaattttgttatttttgatgaaattatgtgt---ttttcaataatactcttaactatttattatttcattctatt 28326797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 13881174 - 13881094
Alignment:
Q  220 caaataaattttgttatttttgatgaaaatatgtgtgtgtttt-ctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||||||||||||||| | |||| || |||| ||||||||||||||| |||||||||||||||| ||||    
T  13881174 caaataaattttgttatttttgatgaaattgtgtgcgtttttttctataatacccttaatcatttattatttcattatatt 13881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 35866615 - 35866751
Alignment:
Q  163 gctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt 262  Q
    ||||| ||||||||| ||||| ||||||||||  |||||||  |   |||||||||  | |||||| ||||||||||| |||||| | | ||||| ||||    
T  35866615 gctccttccgtttcacaatacttgtccattttaaagaaattatatataccaagaaattagataaatgttgttatttttcatgaaattctttgtgtttttt 35866714  T
Q  263 ctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||||||| |||||||||||| ||| ||||    
T  35866715 ctataatacccttaaacatttattattttattctatt 35866751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 8697949 - 8697898
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8697949 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 8697898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 41308012 - 41307961
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41308012 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 41307961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 45278752 - 45278701
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45278752 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 45278701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 215
Target Start/End: Original strand, 10646597 - 10646645
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10646597 cctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 10646645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 37510314 - 37510405
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||| |||||||||||||||||||| || ||| | | | | | ||||| ||||||||||||| |||||| ||||||||||||||||    
T  37510314 accaagaaactaaataaattttgttatttttaataaaattctttctattttttcaataatacccttaatcatttaatatttcattttatttt 37510405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 40486504 - 40486453
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  40486504 ctccctccgtttcaaaatacatgtccattttgaagaaattgcagtaaccaag 40486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 28567924 - 28568051
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt-cta 265  Q
    ||||||||||||||||| ||||||||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | ||||| |||| |||    
T  28567924 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttcta 28568023  T
Q  266 taatacccttaaccatttattatttcatt 294  Q
    |||||||||   | |||||||||||||||    
T  28568024 taataccctgctc-atttattatttcatt 28568051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 294
Target Start/End: Original strand, 28575517 - 28575644
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgtttt-cta 265  Q
    ||||||||||||||||| ||||||||||| ||||||| |||  |||||  || ||||||||| |||| |||||| |||||| | | ||||| |||| |||    
T  28575517 cctccgtttcaaaatacttgtccattttgaagaaattacacataccaatgaatcaaataaatgttgtcattttttatgaaattctttgtgtctttttcta 28575616  T
Q  266 taatacccttaaccatttattatttcatt 294  Q
    |||||||||   | |||||||||||||||    
T  28575617 taataccctgctc-atttattatttcatt 28575644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 10181074 - 10181002
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    |||||||||||||||||||| || ||| || || ||| |||| ||||||||| |||||||||||||||||||||    
T  10181074 aaataaattttgttattttttataaaattacgtttgtttttt-tataataccgttaaccatttattatttcatt 10181002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 30906917 - 30906828
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgt--gtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||| ||||||||||||||||||||| |||||| | |||  || | |||||||| | | ||||||||||||||||||| ||| ||||    
T  30906917 caagaaatcaaataaattttgttattttttatgaaattttgtgagttttttttctatgaaaaccttaaccatttattatttaattctatt 30906828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 41305768 - 41305803
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||| ||||||||    
T  41305768 ctccgtttcaaaatacatgtccattttagagaaatt 41305803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 291
Target Start/End: Complemental strand, 27564075 - 27563999
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttc 291  Q
    |||||| ||||||| ||||||||||||| |||| | ||||||| | |||| ||||| ||||||||| ||||||||||||    
T  27564075 aagaaatcaaataatttttgttattttt-atgagattatgtgtttttttt-tataacacccttaacaatttattatttc 27563999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 40058296 - 40058341
Alignment:
Q  155 aaactactgctccctccgtttcaaaatacatgtccattttggagaa 200  Q
    |||||||| |||||||||||||| ||||| |||||||||| |||||    
T  40058296 aaactactactccctccgtttcataatacttgtccattttagagaa 40058341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 30268602 - 30268530
Alignment:
Q  222 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    |||||||||||||| ||||| || || ||| ||| | ||||||||||||||  |||| ||||||||| |||||    
T  30268602 aataaattttgttacttttggtggaattatttgtcttttttctataataccgctaactatttattatctcatt 30268530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 42587248 - 42587276
Alignment:
Q  162 tgctccctccgtttcaaaatacatgtcca 190  Q
    |||||||||||||||||||||||||||||    
T  42587248 tgctccctccgtttcaaaatacatgtcca 42587276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 45278021 - 45278053
Alignment:
Q  171 cgtttcaaaatacatgtccattttggagaaatt 203  Q
    |||||||||||||||||||||||| ||||||||    
T  45278021 cgtttcaaaatacatgtccattttagagaaatt 45278053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 13364845 - 13364988
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13364845 ctccctccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 13364944  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  13364945 tataatacccttaatcatttattatttcattttatttttttctc 13364988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 198857 - 199000
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  198857 ctccctccgtttcaaaatacatgtccattttggagaaattgcactgaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttc 198956  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  198957 tataatacccttaatcatttattatttcattttatttttttctc 199000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 46694385 - 46694242
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46694385 ctccctccgtttcaaaatacatgtcctttttggagaaattgcactaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 46694286  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  46694285 tataatacccttaatcatttattatttcattttatttttttctc 46694242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 3383078 - 3383221
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3383078 ctccttccgtttcaaaatatatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 3383177  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  3383178 tataatacccttaaacatttattatttcattttatttttttctc 3383221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 19241943 - 19241800
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19241943 ctccctccgtttcaaaatacatgtccattttggtgaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatatgtgtgttttc 19241844  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||    
T  19241843 tataatacccttaatcatttattatttcattttacttttttctc 19241800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 29375140 - 29375277
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29375140 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttcttatttttgatgaaaatatgtgtgtgttttc 29375239  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  29375240 tataatacccttaaccatttattatttctttttttttt 29375277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 36881284 - 36881425
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  36881284 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaata--tgtgtgttttc 36881381  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||||||||  |||||||||||||||||||||| |||||    
T  36881382 tataatacccttaattatttattatttcattttatttttttctc 36881425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 23088206 - 23088063
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||| ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23088206 ctccctctgtttcaaaatatatgtctattttgaagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 23088107  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  23088106 tataatacccttaatcatttattatttcattttatttttttctc 23088063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 43750139 - 43750276
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  43750139 ctcccttcgtttcaaaatacatgtccattttggagaaattggagtaaccaagaaaccaaataaattttgttatttttgatgaaattatatgtgtgttttc 43750238  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  43750239 tataatacacttaaccatttattatttcattctatttt 43750276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 32835226 - 32835129
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 266  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  32835226 tccgtttcaaaatacatgtccattttggagaaattgcaataaccaagaaaacaaataaattttgttatttttgatgaaattatgtgtgtgttttctat 32835129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 13702771 - 13702890
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| ||| ||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||| |||||||    
T  13702771 ctccatccattttaaaatacatgcctattttggagaaattgcagtaaccaagaaaccaaataaattttgatatttttgatgaaattatatgtttgttttc 13702870  T
Q  264 tataatacccttaaccattt 283  Q
    ||||||||| ||||||||||    
T  13702871 tataatacctttaaccattt 13702890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 27707439 - 27707363
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttattttt 240  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27707439 ctccctccgtttcgaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataaattttgttattttt 27707363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 294
Target Start/End: Original strand, 37780996 - 37781069
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcatt 294  Q
    ||||||||||| ||||||||||||||| | ||||||| |||||||||||||  |||||||||||||||||||||    
T  37780996 aaataaattttattatttttgatgaaattctgtgtgttttttctataatactattaaccatttattatttcatt 37781069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 12094584 - 12094635
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12094584 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 12094635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Complemental strand, 19897152 - 19897067
Alignment:
Q  214 agaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||| ||||||||||||||||||||| |||||| | | ||||| ||||||||||||||||||  | |||||||||||||| ||||    
T  19897152 agaaatcaaataaattttgttattttttatgaaattctttgtgttttttctataatacccttactcttttattatttcattctatt 19897067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 19911511 - 19911562
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  19911511 ctccctccgtttcaaaatacatgttcattttggagaaattgcagtaaccaag 19911562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 37293439 - 37293522
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa 247  Q
    |||||||||||||| ||||| ||||||||||| ||||||| |||  |||||| || ||||||||| |||| |||||||||||||    
T  37293439 ctccctccgtttcacaatacttgtccattttgaagaaattacacataccaaggaatcaaataaatgttgtcatttttgatgaaa 37293522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 44277506 - 44277455
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  44277506 ctccctccgtttcaaaatacatgtctattttggagaaattgcagtaaccaag 44277455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 1455374 - 1455297
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattattt 290  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||||| | ||||||||| | ||| ||||||||||||||    
T  1455374 aagaaatcaaataaattttgttatttttgataaaattatttgtgtttcttctataattctcttcaccatttattattt 1455297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 27707177 - 27707120
Alignment:
Q  250 atgtgtgtgttttctataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||| |||||    
T  27707177 atgtatgtgttttctataatatccttaaccatttattatttctttttatttttttctc 27707120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 38805242 - 38805298
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    |||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  38805242 tactactccctccgttttaaaatacatgtccattttagagaaattgcagtaaccaag 38805298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 48820512 - 48820444
Alignment:
Q  179 aatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaa 247  Q
    |||||||||  |||||||||||||| |  || |||| ||||||||||||||||||||||||||||||||    
T  48820512 aatacatgtttattttggagaaattacggtatccaataaaccaaataaattttgttatttttgatgaaa 48820444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 53559880 - 53559750
Alignment:
Q  169 tccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataa 268  Q
    ||||||||| ||||| |||   ||||| ||||||| |||  | ||||||| ||||||||| |||||||||||||||||| | | ||||| || | ||  |    
T  53559880 tccgtttcacaatacttgttgcttttgaagaaattacacatatcaagaaaacaaataaatgttgttatttttgatgaaattctctgtgttttatttacga 53559781  T
Q  269 tacccttaaccatttattatttcattttatt 299  Q
    || ||||| || |||||||||||||||||||    
T  53559780 tatccttacccgtttattatttcattttatt 53559750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 48963158 - 48963223
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaatttt 231  Q
    |||||||||||||||||||||| || |||||||||||||||  |||||||| ||| ||||||| ||||    
T  48963158 ctccctccgtttcaaaatacatatctattttggagaaattg--ctaaccaataaatcaaataattttt 48963223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 19912213 - 19912174
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  19912213 ctccctccgtttcaaaatacatgtccattttagagaaatt 19912174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 38806380 - 38806341
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  38806380 ctccctccgtttcaaaatacatgtccattttagagaaatt 38806341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 44522491 - 44522567
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattattt 290  Q
    ||||||| |||||||||||| |||||||| ||||||  |||||| |  ||||||||||||  |||||||||||||||||    
T  44522491 caagaaatcaaataaattttattattttttatgaaatcatgtgttt--tttctataatacttttaaccatttattattt 44522567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 24064283 - 24064361
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||| ||| || ||| |   ||||| |||||||||||||||||| ||||||||||||| ||| ||||    
T  24064283 aaataaattttgttatattttataaaattcactgtgttttttctataatacccttacccatttattattttattctatt 24064361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 307
Target Start/End: Original strand, 26105079 - 26105176
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttct-ataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||| ||| ||||||||||||||||||||| ||||   | | | |||||||| | | |||||||||||||||||||||||||||| |||||| |||||    
T  26105079 accaataaatcaaataaattttgttatttttaatgatttttttt-tgtgtttttttacaatacccttaaccatttattatttcattatatttttttctc 26105176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 54086577 - 54086690
Alignment:
Q  185 tgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccattta 284  Q
    ||||||||||| ||||||| |||   ||||| || ||||||||| |||| ||| ||||||||| | | ||| | ||||||||||||||||||  || |||    
T  54086577 tgtccattttgaagaaattacacatgccaaggaatcaaataaatgttgtcattattgatgaaattctttgtattttttctataatacccttactca-tta 54086675  T
Q  285 ttatttcattttatt 299  Q
    |||||||||| ||||    
T  54086676 ttatttcattctatt 54086690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 12095472 - 12095423
Alignment:
Q  154 taaactactgctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| ||||||||    
T  12095472 taaacaactactccctccgtttcaaaatatatgtccattttagagaaatt 12095423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 4235760 - 4235803
Alignment:
Q  171 cgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  4235760 cgtttcaaaatacatgtcg-ttttggagaaattgcactaaccaag 4235803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 18356134 - 18356007
Alignment:
Q  172 gtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatac 271  Q
    |||||| ||||||| ||||||||| | ||||| |||   ||||| ||  ||||| || |||| | ||||| ||||| | | ||||| |||||||||||||    
T  18356134 gtttcacaatacatatccattttgaaaaaattacacatgccaaggaattaaatacatgttgtcagttttggtgaaattctttgtgttttttctataatac 18356035  T
Q  272 ccttaaccatttattatttcattttatt 299  Q
    |||||  ||||||| |||||||| ||||    
T  18356034 ccttactcatttatcatttcattctatt 18356007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 44276781 - 44276816
Alignment:
Q  168 ctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    ||||||||||||||||||||||||||| ||||||||    
T  44276781 ctccgtttcaaaatacatgtccattttagagaaatt 44276816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 52805244 - 52805166
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||||| ||||||||||||| | | ||  | ||||||||||||| ||||  |||||||||||| ||| ||||    
T  52805244 aaataaattttgtcatttttgatgaaattgtttgcattttttctataatactcttacacatttattattttattatatt 52805166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 4226716 - 4226759
Alignment:
Q  171 cgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  4226716 cgtttcaaaatacatgtcg-ttttggagaaattgcagtaaccaag 4226759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 159 - 301
Target Start/End: Complemental strand, 12807133 - 12806991
Alignment:
Q  159 tactgctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 258  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12807133 tactactccctccgtttcaaaatacatgtccattttggagaaattgcattaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtg 12807034  T
Q  259 ttttctataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  12807033 ttttctataatacccttaatcatttattatttcattttatttt 12806991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 25773651 - 25773788
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25773651 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaatcaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 25773750  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25773751 tataatacccttaatcatttattatttcattttatttt 25773788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 30720767 - 30720624
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30720767 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttt 30720668  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||| ||||||||||||||||||| |||||    
T  30720667 tataatacccttaatcatctattatttcattttatttttttctc 30720624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 10285332 - 10285189
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10285332 ctccctccgtttcaaaatagatgtctattttggagaaattgcattaaccaagaaactaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 10285233  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  10285232 tataatacccttaatcatttattatttcattttatttttttctc 10285189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 36561374 - 36561231
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| |||||||||||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36561374 ctccatccgtttcaaaatacatgtccattttagaaaaattgcagtaatcaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 36561275  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    ||||||||| |||||||||||||||||||||||||||| |||||    
T  36561274 tataatacctttaaccatttattatttcattttatttttttctc 36561231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 164 - 307
Target Start/End: Complemental strand, 40886885 - 40886742
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  40886885 ctccatccgtttcaaaatacatgttcattttggagaaattgcactaaccaagaaatcgaataaattttgttatttttgatgaaaatatgtgtgtattttc 40886786  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  40886785 tataatacccttaatcatttattatttcattttatttttttctc 40886742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 301
Target Start/End: Complemental strand, 37900899 - 37900762
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||| ||| |||||||||||    
T  37900899 ctccctccgtttcaaaatacacatccattttggagaaattgcagtaaccaagaaactaaataaattttgatatttttgatgaaattatatgtgtgttttc 37900800  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  37900799 tataatacccttaaccatttattatttcattctatttt 37900762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 7277688 - 7277560
Alignment:
Q  173 tttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacc 272  Q
    |||||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  7277688 tttcaaaatacatgtctattttggagaaattggagtaaccaataaaccaaataaattttgttatttttgatcaaattatgtgtgtgttttctataatacc 7277589  T
Q  273 cttaaccatttattatttcattttatttt 301  Q
     ||||||||||||||||||||| ||||||    
T  7277588 tttaaccatttattatttcattatatttt 7277560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 25683467 - 25683366
Alignment:
Q  200 aattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  25683467 aattgcaataaccaagaaaccaaataaattttgttatttttgataaaattatgtgtgtgttttctataatacccttaaccatttattattttattctatt 25683368  T
Q  300 tt 301  Q
    ||    
T  25683367 tt 25683366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 16983260 - 16983393
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataa--attttgttatttttgatgaaaatatgtgtgtgttt 261  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||| || ||||||||||||  || ||||| |||    
T  16983260 ctccctctgtttcaaaatacatgtccattttggagaaattgcagtaaccaagaaaccaaataattttttttttttttttgatgaaatgatatgtgttttt 16983359  T
Q  262 tctataatacccttaaccatttattatttcatttt 296  Q
    |||| |||||||||||||| ||||||||| |||||    
T  16983360 tctacaatacccttaacca-ttattattttatttt 16983393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 212 - 287
Target Start/End: Complemental strand, 23098461 - 23098386
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttatta 287  Q
    |||||||| ||||||||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||    
T  23098461 caagaaactaaataaattttgttatttttgatgaaattatgtgcatgtttcctataatacccttaaccatttatta 23098386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 299
Target Start/End: Complemental strand, 734611 - 734478
Alignment:
Q  165 tccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttct 264  Q
    ||||||||||||| ||||| ||||||||||| ||||||| | |  |||||  || |||||||||||||| ||| ||||||||| | | ||||| ||||||    
T  734611 tccctccgtttcacaatacttgtccattttgaagaaattactcataccaaagaatcaaataaattttgtcattattgatgaaattctttgtgt-ttttct 734513  T
Q  265 ataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||||  |||||||||||||||| ||||    
T  734512 ataatacccttactcatttattatttcattctatt 734478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 30403191 - 30403101
Alignment:
Q  210 accaagaaaccaaataaattttgttatttttgatgaaaatatgtg-tgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | | ||||||||||||| ||||| ||||| |||||||||||||||    
T  30403191 accaagaaaccaaataaattttgttatttttgatgaaattctgtgtttttttttctataatactcttaatcatttgttatttcattttatt 30403101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 164 - 299
Target Start/End: Original strand, 39070885 - 39071020
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgt-gtgtgtttt 262  Q
    |||||||||||||| ||||| ||| ||||||| ||||||| |||  |  ||| || ||||||||| |||| ||||||||||||| | ||| |||| ||||    
T  39070885 ctccctccgtttcacaatacttgttcattttgaagaaattacacatattaaggaatcaaataaatgttgtcatttttgatgaaa-tctgttgtgtttttt 39070983  T
Q  263 ctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||||||  |||||||||||||||| ||||    
T  39070984 ctataatacccttactcatttattatttcattctatt 39071020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 299
Target Start/End: Original strand, 11319564 - 11319696
Alignment:
Q  167 cctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctat 266  Q
    ||||||||||| ||||  ||||||||||| ||||||| |||  || ||  || ||||||||| |||| |||||| |||||| | | ||| | ||||||||    
T  11319564 cctccgtttcacaatatttgtccattttgaagaaattacacatactaatgaatcaaataaatgttgtaattttttatgaaattctttgttttttttctat 11319663  T
Q  267 aatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||  |||||||||||||||| ||||    
T  11319664 aatacccttactcatttattatttcattctatt 11319696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 15305263 - 15305216
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15305263 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaac 15305216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 299
Target Start/End: Original strand, 16054173 - 16054249
Alignment:
Q  221 aaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    |||||||||||||||||||| |||||| | ||||| |  ||||||||||| |||| |||||||||||||| ||| ||||    
T  16054173 aaataaattttgttattttttatgaaattttgtgttt--tttctataatatccttgaccatttattattttattctatt 16054249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 1056498 - 1056422
Alignment:
Q  222 aataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||||||||||||||| |||||| | | ||||| |||||||||||||  || | |||||||||||||||| ||||    
T  1056498 aataaattttgttatttttaatgaaattctttgtgt-ttttctataatactattgatcatttattatttcattatatt 1056422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 15304824 - 15304863
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  15304824 ctccctccgttttaaaatacatgtccattttagagaaatt 15304863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 11796453 - 11796559
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||| ||||| | ||| ||||  ||||| ||||||| ||   |||||||||  |||| |||||||||||||||||||||| | | ||||| | |||    
T  11796453 ctccctccttttcacactacttgtcatttttgaagaaattacagataccaagaaattaaattaattttgttatttttgatgaaattctatgtgtttgttc 11796552  T
Q  264 tataata 270  Q
    |||||||    
T  11796553 tataata 11796559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 25683231 - 25683267
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaa 200  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  25683231 ctccctccgtttcataatacttgtccattttggagaa 25683267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 45456 - 45593
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  45456 ctccctccgtttcaaaatacatgttcattttggagaaattgcaccaaccaagaaaccaaataaattttgttatttttgatgaaattatgtgtgtattttc 45555  T
Q  264 tataatacccttaaccatttattatttcattttatttt 301  Q
    ||||||||||||||||||||||||||| ||| ||||||    
T  45556 tataatacccttaaccatttattattttattctatttt 45593  T

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Target: scaffold1770 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 172 - 307
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttc 263  Q
    |||||||||||||||||||||| |||| ||||||||||||||| |||||        |||||||||||||||||||| ||||||||||||||||||||||    
T  172 ctccctccgtttcaaaatacatatccactttggagaaattgcagtaacc--------aaataaattttgttattttttatgaaaatatgtgtgtgttttc 263  T
Q  264 tataatacccttaaccatttattatttcattttattttcttctc 307  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  264 tataatacccttaaccatttattatttcattttatttttttctc 307  T

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Target: scaffold0062 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 177 - 301
Target Start/End: Complemental strand, 525 - 403
Alignment:
Q  177 aaaatacatgtccattttggagaaattgcactaaccaagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataataccctta 276  Q
    ||||||||||| |||||||| ||||||||| ||| ||| ||| |||||||||||||||||||||||| ||| ||  |||||||||| |||||||||||||    
T  525 aaaatacatgttcattttggcgaaattgcagtaatcaaaaaatcaaataaattttgttatttttgataaaatta--tgtgtgttttttataataccctta 428  T
Q  277 accatttattatttcattttatttt 301  Q
    | |||||||||||||||| ||||||    
T  427 atcatttattatttcattctatttt 403  T

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Target: scaffold0056 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 70874 - 70961
Alignment:
Q  212 caagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttttctataatacccttaaccatttattatttcattttatt 299  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  70874 caagaaatcaaataaattttgttatttttgatgaaattctgtgtgttttttctgtaacacccttaaccatttattatttcattctatt 70961  T

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Target: scaffold0257 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 23469 - 23520
Alignment:
Q  164 ctccctccgtttcaaaatacatgtccattttggagaaattgcactaaccaag 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23469 ctccctccgtttcaaaatacatgtccattttggagaaattgcagtaaccaag 23520  T

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Target: scaffold0257; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 23920 - 23872
Alignment:
Q  155 aaactactgctccctccgtttcaaaatacatgtccattttggagaaatt 203  Q
    |||||| | |||| |||||||||||||||||||||||||| ||||||||    
T  23920 aaactattactccatccgtttcaaaatacatgtccattttagagaaatt 23872  T

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Target: scaffold0025 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 65375 - 65301
Alignment:
Q  228 ttttgttatttttgatgaaaatatgtgtgtgtttt-ctataatacccttaaccatttattatttcattttatttt 301  Q
    |||| ||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||    
T  65375 ttttattatttttgatgaaattatatgtgtttttttctataatacccttaaccatttattatttcattctatttt 65301  T

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Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 15551 - 15465
Alignment:
Q  213 aagaaaccaaataaattttgttatttttgatgaaaatatgtgtgtgttt------tctataatacccttaaccatttattatttcatt 294  Q
    |||||| ||||||||||| |||||||||||||||||| | ||| | |||      ||||| |||||||||||||||||||||||||||    
T  15551 aagaaatcaaataaattt-gttatttttgatgaaaatctatgtttttttcttctttctattatacccttaaccatttattatttcatt 15465  T

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