View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17458_low_9 (Length: 294)
Name: NF17458_low_9
Description: NF17458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17458_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 36533886 - 36534150
Alignment:
| Q |
19 |
catatagaagtttcaaggttagttcactaatcattaatggattacttcaattggattaatcacattaaaagatatacctcattccaagaaaaagttggtt |
118 |
Q |
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| T |
36533886 |
catatagaagtttcaaggttagttcactaatcattaatggattacttcaattggattattcacattaaaagatatacctcattccaagaaaaagttggtt |
36533985 |
T |
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| Q |
119 |
caaattttcatgagtttacctttaaagtttgcttgtgatgccaaaaggtttcaaaaatagattaattttgaccatgcaccttaaaacattttacattgtc |
218 |
Q |
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| T |
36533986 |
caaattttcatgagttttcctttaaagtttgcttgtgatgccaaaaggtttcaaaaatagattaattttgaccatgcaacttaaaacattttacactgtc |
36534085 |
T |
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| Q |
219 |
aatgaatcacaaattattatcatttatatgac-ttttatggtaaatatgattgaagtcaaatatt |
282 |
Q |
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| T |
36534086 |
aatccatcacaaattactatcatttatatgactttttatggtaaatatgattgaagtcaattatt |
36534150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 39156669 - 39156714
Alignment:
| Q |
237 |
atcatttatatgacttttatggtaaatatgattgaagtcaaatatt |
282 |
Q |
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| T |
39156669 |
atcatttgtatgacttttaaggtatgtatgattgaagtcaaatatt |
39156714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 22237796 - 22237841
Alignment:
| Q |
237 |
atcatttatatgacttttatggtaaatatgattgaagtcaaatatt |
282 |
Q |
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|||| |||||||||||||| |||| |||||||| |||||||||||| |
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| T |
22237796 |
atcaattatatgacttttaaggtagatatgattaaagtcaaatatt |
22237841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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