View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1745_high_5 (Length: 223)

Name: NF1745_high_5
Description: NF1745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1745_high_5
NF1745_high_5
[»] chr2 (3 HSPs)
chr2 (10-209)||(38877246-38877447)
chr2 (156-205)||(24411281-24411330)
chr2 (156-205)||(24408239-24408288)
[»] chr7 (2 HSPs)
chr7 (10-209)||(5777424-5777623)
chr7 (155-208)||(28842292-28842345)
[»] chr1 (1 HSPs)
chr1 (11-208)||(30092735-30092931)
[»] chr4 (1 HSPs)
chr4 (124-209)||(11115382-11115467)
[»] chr8 (1 HSPs)
chr8 (121-209)||(25938199-25938288)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 38877246 - 38877447
Alignment:
Q  10 ctcatttgactcgtccggggaatttggctagtatttggaagcataaagtccctccgaaggttaaaaatatgatatggagagtttgcaggggatgtttact 109  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38877246 ctcatttgactcgtctggggaatttggctagtatttgaaagcataaagtccctccgaaggttaaaaatatgatatggagagtttgcatgggatgtttact 38877345  T
Q  110 gacacaggcgaggttattggataaaggggtgaactgttcttccatgt--gtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttgatt 207  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38877346 gacataggcaaggttattggataaaggggtgaactgttcttccatgtgcgtgttatgtgtgaagaaagttacgaggatgtgagtaatgtgttgtttgatt 38877445  T
Q  208 gt 209  Q
    ||    
T  38877446 gt 38877447  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 24411281 - 24411330
Alignment:
Q  156 tgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttga 205  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  24411281 tgtgttatgtgtgaagaatgttacgaggatgtgagtcatgttttgtttga 24411330  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 24408288 - 24408239
Alignment:
Q  156 tgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttga 205  Q
    |||||||||||||||||| |||||||||||| ||||||||| ||||||||    
T  24408288 tgtgttatgtgtgaagaatgttacgaggatgcgagtcatgttttgtttga 24408239  T

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Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 5777424 - 5777623
Alignment:
Q  10 ctcatttgactcgtccggggaatttggctagtatttggaagcataaagtccctccgaaggttaaaaatatgatatggagagtttgcaggggatgtttact 109  Q
    |||||||||||| | ||||||  | | ||||||||||||||| |||||||| |  |||||||||||||||||||||||||||||  ||||||| |||||     
T  5777424 ctcatttgactcattcggggagctggtctagtatttggaagcttaaagtccttttgaaggttaaaaatatgatatggagagtttataggggatttttacc 5777523  T
Q  110 gacacaggcgaggttattggataaaggggtgaactgttcttccatgtgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttgattgt 209  Q
    |||||| |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5777524 gacacaagcgaggttattggataaaagggtgaattgttcttccatatgtgttatgtgtgaagaaagctacgaggatgtgagtcatgtgttgtttgattgt 5777623  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 28842345 - 28842292
Alignment:
Q  155 gtgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttgattg 208  Q
    |||||||| |||||||||||||||  | ||||||||||||||||||||||||||    
T  28842345 gtgtgttacgtgtgaagaaagttataaagatgtgagtcatgtgttgtttgattg 28842292  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 30092931 - 30092735
Alignment:
Q  11 tcatttgactcgtccggggaatttggctagtatttggaagcataaagtccctccgaaggttaaaaatatgatatggagagtttgcaggggatgtttactg 110  Q
    |||||||  ||||||||| |||| | ||||||| ||||||| | |||| || ||||| || |||||| || |  |||||||||| |||||||| |||| |    
T  30092931 tcatttgtgtcgtccgggtaattggtctagtatatggaagctttaagttcc-ccgaaagtaaaaaatctggttcggagagtttgtaggggatgcttaccg 30092833  T
Q  111 acacaggcgaggttattggataaaggggtgaactgttcttccatgtgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttgattg 208  Q
    ||||  | | ||||| | || |||||||| || || || ||  ||||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  30092832 acacgagtgcggttactagacaaaggggttaattgctcatctttgtgtgttatgtgtgaagaaagttatggagatgtgagtcatgtgttgtttgattg 30092735  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 209
Target Start/End: Original strand, 11115382 - 11115467
Alignment:
Q  124 tattggataaaggggtgaactgttcttccatgtgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttgattgt 209  Q
    |||| ||||||||||| || ||||| ||  | ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||    
T  11115382 tattagataaaggggttaattgttcatctttatgtgttatgtgtgaagaaagttatgaggatgcgagtcacgtgttgtttgattgt 11115467  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 209
Target Start/End: Original strand, 25938199 - 25938288
Alignment:
Q  121 ggttattggataaagggg-tgaactgttcttccatgtgtgttatgtgtgaagaaagttacgaggatgtgagtcatgtgttgtttgattgt 209  Q
    ||||| |||||||||||| |||| ||||| |  |||||||||||||||||||||||||| || ||    ||||||||| |||||||||||    
T  25938199 ggttactggataaagggggtgaattgttcatttatgtgtgttatgtgtgaagaaagttatgaagacacaagtcatgtgatgtttgattgt 25938288  T

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