View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1745_low_1 (Length: 481)

Name: NF1745_low_1
Description: NF1745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1745_low_1
NF1745_low_1
[»] chr8 (12 HSPs)
chr8 (1-467)||(43539464-43539929)
chr8 (198-398)||(35676155-35676355)
chr8 (3-178)||(43539101-43539276)
chr8 (3-178)||(59548-59723)
chr8 (5-178)||(35675612-35675785)
chr8 (27-176)||(60168-60313)
chr8 (9-132)||(35178802-35178925)
chr8 (60-152)||(28524811-28524903)
chr8 (4-152)||(32898423-32898571)
chr8 (198-247)||(59741-59790)
chr8 (145-178)||(35676373-35676406)
chr8 (1-97)||(2552008-2552104)
[»] chr4 (11 HSPs)
chr4 (4-178)||(29980200-29980373)
chr4 (240-321)||(29979822-29979903)
chr4 (5-178)||(39267720-39267892)
chr4 (364-437)||(29979901-29979974)
chr4 (6-178)||(29978833-29979007)
chr4 (5-178)||(39268803-39268975)
chr4 (63-152)||(21623095-21623184)
chr4 (54-152)||(21621870-21621968)
chr4 (75-118)||(32244700-32244743)
chr4 (60-116)||(2786274-2786330)
chr4 (88-152)||(24753539-24753603)
[»] chr3 (12 HSPs)
chr3 (3-131)||(26652603-26652731)
chr3 (4-178)||(27823726-27823900)
chr3 (60-155)||(40206912-40207008)
chr3 (105-178)||(30270735-30270808)
chr3 (75-148)||(40205950-40206023)
chr3 (4-69)||(47118112-47118177)
chr3 (4-132)||(17701917-17702045)
chr3 (9-141)||(48572987-48573119)
chr3 (9-132)||(17700520-17700643)
chr3 (5-48)||(20464543-20464586)
chr3 (4-150)||(52318297-52318443)
chr3 (75-111)||(40317838-40317874)
[»] chr7 (14 HSPs)
chr7 (5-178)||(8484158-8484331)
chr7 (4-178)||(8077545-8077722)
chr7 (3-123)||(8075482-8075601)
chr7 (5-152)||(48646047-48646194)
chr7 (1-152)||(35727693-35727843)
chr7 (4-151)||(7258272-7258419)
chr7 (9-48)||(48788754-48788793)
chr7 (9-152)||(44333141-44333282)
chr7 (88-155)||(384934-385001)
chr7 (2-48)||(385693-385739)
chr7 (3-49)||(21062813-21062859)
chr7 (273-338)||(24381895-24381961)
chr7 (4-48)||(10899155-10899199)
chr7 (61-117)||(24844627-24844683)
[»] chr2 (8 HSPs)
chr2 (4-132)||(32766237-32766365)
chr2 (9-152)||(31091505-31091648)
chr2 (4-117)||(8420010-8420123)
chr2 (2-118)||(12746213-12746329)
chr2 (60-152)||(15441949-15442041)
chr2 (60-148)||(38853808-38853896)
chr2 (7-39)||(5428361-5428393)
chr2 (4-152)||(32764935-32765082)
[»] chr1 (5 HSPs)
chr1 (63-148)||(50107185-50107270)
chr1 (4-118)||(11060796-11060910)
chr1 (3-152)||(7945532-7945681)
chr1 (60-117)||(1001207-1001264)
chr1 (100-152)||(534517-534569)
[»] chr5 (11 HSPs)
chr5 (9-117)||(9538062-9538170)
chr5 (1-48)||(24900414-24900461)
chr5 (9-152)||(4592863-4593006)
chr5 (9-116)||(8074453-8074560)
chr5 (9-152)||(19182952-19183095)
chr5 (81-148)||(19271416-19271483)
chr5 (3-45)||(16978988-16979030)
chr5 (9-79)||(28591165-28591235)
chr5 (3-48)||(14891225-14891270)
chr5 (6-99)||(23772809-23772902)
chr5 (60-148)||(26327054-26327142)
[»] chr6 (1 HSPs)
chr6 (5-117)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 43539929 - 43539464
Alignment:
Q  1 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 100  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  43539929 ttttgagtaaatagacactttggtccctgactttgcacctcgctgtcattttagtcccctactcaggataaactacaaaatagtccttgaatatgcacat 43539830  T
Q  101 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagtnnnnnnnnnnnnnnnnnnnatt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                   |||    
T  43539829 ctgttatcagtttagtccttaccgttaaaaacctatgttaactcatgatgtgtcaatcatagggaccaaattgaaagtaaaaaaaaaaaaaaattt-att 43539731  T
Q  201 aatgataaaaaaccaaataaagaatatttatcaccttcatctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataattacctt 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43539730 aatgataaaaaaccaaaaaaagaatatttatcaccttcatctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataattacctt 43539631  T
Q  301 tttactcatataagactacaacattaggcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttcaaactggcatccctaaacacatt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43539630 tttactcatataagactacaacattaggcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttcaaaatggcatccctaaacacatt 43539531  T
Q  401 ctcaatggtctatctttaatagaacatgttaacaggggnnnnnnntcaagaattggtagaaagaaag 467  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  43539530 ctcaatggtctatctttaatagaacatgttaacaggggaaaaaaatcaagaattggtagaaagaaag 43539464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 198 - 398
Target Start/End: Complemental strand, 35676355 - 35676155
Alignment:
Q  198 attaatgataaaaaa-ccaaataaagaatatttatcaccttcatctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataatta 296  Q
    ||||||||||||||| ||||| ||| |||||| | || ||||||||| |||||||||| |||||||||||  |||||||||||||||||| ||| |||||    
T  35676355 attaatgataaaaaaaccaaaaaaataatattcaccatcttcatctccatctttgcaaattcaaagttgt--ctctttttgaaattttcagttagaatta 35676258  T
Q  297 cctttttactcatataagactacaacattaggcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttc-aaactggcatccctaaac 395  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  35676257 cctttttactcatataagactacagcattaagcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttcaaaaatggcatccctaaac 35676158  T
Q  396 aca 398  Q
    |||    
T  35676157 aca 35676155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 43539101 - 43539276
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 102  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  43539101 ttgagtaaatagtcactttggtccctaactttgcacctcgctgtcactttagtccccgactcaggataaactacaaaatagtccctgaatgtgtatatct 43539200  T
Q  103 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||||||| ||||||||||||||||| | ||||||||   ||||||||||| ||||||||||||||||||||    
T  43539201 gttatcagtttaatccttaccgttaaaaaattctgttaactaccgatgtgtcaattatagggaccaaattgaaagt 43539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 59548 - 59723
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 102  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | | ||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctgaatgggtagatct 59647  T
Q  103 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    || |||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  59648 gtcatcagtttagtccttacaattaaaaaattatgttaaccgatgatgtgtcaatcatagggaccaaattgaaagt 59723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 35675612 - 35675785
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 104  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| || |||||| || ||||||||    
T  35675612 gagttaatagtcattttggtcgttgactttgcacctcgctatcactttagtcctcaacttaggataaactacaaaatattctttgaatatgtacatctgt 35675711  T
Q  105 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||| | ||||||||||||||||  | |||||| | ||||||||||||| |||| ||||||||| |||||    
T  35675712 tatcagttcaatccttaccgttaaaaatttctgttaattgatgatgtgtcaattatagagaccaaattaaaagt 35675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 60313 - 60168
Alignment:
Q  27 ttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgtt 126  Q
    |||||||||||||||| ||||| ||| |||||    ||||||||||||||| |||||||| |||||||| | | ||||||||||| ||||| ||||| ||    
T  60313 ttgactttgcacctcgttgtcactttggtccc----tcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttaccttt 60218  T
Q  127 aaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaa 176  Q
    |||||  | ||||||||  |||||||||| ||||||||||||||||||||    
T  60217 aaaaatttctgttaactgctgatgtgtcattcatagggaccaaattgaaa 60168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 35178925 - 35178802
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    |||||||||||||||||| ||||| ||||| |||||||||| || ||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  35178925 aaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttatc 35178826  T
Q  109 agtttagtccttaccgttaaaaaa 132  Q
    | |||||||| |  ||||||||||    
T  35178825 actttagtccctgacgttaaaaaa 35178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 28524811 - 28524903
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| |||||||  |  ||||||| || | |||||||| ||||||||    
T  28524811 gactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgtg 28524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 32898571 - 32898423
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||| ||||||||||||| |||| ||||| |||| ||| ||||||  |  ||||| |||| ||||| || ||||||  ||||| ||| | ||||| || |    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    |||||| |||||||| |  |||||||||| | |||||| | ||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 32898423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 59741 - 59790
Alignment:
Q  198 attaatgataaaaaaccaaataaagaatatttatcaccttcatctctatc 247  Q
    ||||||||||||||| |||| |||||||| | |||| |||||||||||||    
T  59741 attaatgataaaaaaacaaaaaaagaatactcatcatcttcatctctatc 59790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 35676406 - 35676373
Alignment:
Q  145 atgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||||||||||||||||| |||||||||||    
T  35676406 atgatgtgtcaatcatagggactaaattgaaagt 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 2552008 - 2552104
Alignment:
Q  1 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 97  Q
    ||||||||||||  ||| ||||||| ||||||||| || ||||||| ||   ||||   |||||||||| || |||||| || ||||||||||||||    
T  2552008 ttttgagtaaatgatcattttggtctttgactttgtacgtcgctgttatcaaagtctttgactcaggattaaatacaaagtaatccttgaatgtgca 2552104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 29980373 - 29980200
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| | || ||    
T  29980373 tgagtaaatagtcactttgatcct-gactttacacctcgctgtcactttagtccccaactcaagataaactacaaaatagtccctgaatgtgtatatttg 29980275  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||||||||| |||||||||||||| | ||||| ||  | |||||||||| ||||| |||||  |||||||    
T  29980274 ttatcagtttagtctttaccgttaaaaaattctgttacctacttatgtgtcaattataggaaccaatctgaaagt 29980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 240 - 321
Target Start/End: Original strand, 29979822 - 29979903
Alignment:
Q  240 tctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataattacctttttactcatataagactacaa 321  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29979822 tctctatctttgcaatttcaaagttgtctctctttttgaaattttcaattagaattacctttttactcatataagactacaa 29979903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 39267720 - 39267892
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 104  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| || |||| |||| | |||||||| ||||| | ||| | |||||||| ||||||||    
T  39267720 gagtaaatagtcattttattcct-gactttgcacctcgctgtcacttcagtcgccgattgaggataaaatacaataaagtgcctgaatgtgtacatctgt 39267818  T
Q  105 tatcagtttagtccttaccgttaaaaaacta-tgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||||||||||||||||| || |||||  ||||| | ||||| ||||||| |||||| |||||||||||||    
T  39267819 tatcagtttagtccttaccgtt-aataactaccgttaaatgatgatatgtcaataataggggccaaattgaaagt 39267892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 29979901 - 29979974
Alignment:
Q  364 caaattcaaccttcaaactggcatccctaaacacattctcaatggtctatctttaatagaacatgttaacaggg 437  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29979901 caaattcaaccttcaaaatggcatccctaaacacattctcaatggtctatctttaatagaatatgttaacaggg 29979974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 29978833 - 29979007
Alignment:
Q  6 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagt-ccccgactcaggataaactac-aaaatagtccttgaatgtgcacatctg 103  Q
    |||||||||||| |||||| | ||||||| ||| ||| ||||| |||||| |||||||| | ||| || ||| |||||||||  ||||  |  |||| ||    
T  29978833 agtaaatagtcattttggttcctgactttacacttcgttgtcactttagttccccgacttatgattaaataccaaaatagtctctgaaaatatacatttg 29978932  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    ||||||||||| ||||||||||||||||  | |||||||||| ||||||| ||| | ||||||||||||||||||    
T  29978933 ttatcagtttaatccttaccgttaaaaatttttgttaactcacgatgtgttaattagagggaccaaattgaaagt 29979007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 39268975 - 39268803
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 104  Q
    ||||||||| ||||||| || | ||| ||| || |||||||||| ||||||| ||||||| | ||||| ||||| | ||| | |||| ||| |  |||||    
T  39268975 gagtaaataatcactttagttcctgattttacatctcgctgtcactttagtctccgactctgaataaaatacaataaagttcctgaacgtgtatctctgt 39268876  T
Q  105 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    ||||||||||||  ||||||||| |||||| |||||  |  ||||||||||||| || ||||||||||||||||    
T  39268875 tatcagtttagtttttaccgtta-aaaactctgttacatggtgatgtgtcaatcctaaggaccaaattgaaagt 39268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 21623184 - 21623095
Alignment:
Q  63 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||    ||||||| || |||||||||| ||||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgtg 21623095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 21621870 - 21621968
Alignment:
Q  54 gtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||| |   |||||| || |||||||||| ||||||||    
T  21621870 gtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgtg 21621968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 32244743 - 32244700
Alignment:
Q  75 acaaaatagtccttgaatgtgcacatctgttatcagtttagtcc 118  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  32244743 acaaagtagtccttgaatgtgcacatccgttatcactttagtcc 32244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 2786274 - 2786330
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt 116  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| ||||||    
T  2786274 gactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagt 2786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 24753603 - 24753539
Alignment:
Q  88 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    ||||||||||| |||||||||| ||||||| ||  ||||||| || | |||||||| ||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgtg 24753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 26652731 - 26652603
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 102  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||| |  |||    
T  26652731 ttgagtaaatagtcacttgggtccctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctct 26652632  T
Q  103 gttatcagtttagtccttaccgttaaaaa 131  Q
    |||||||||||||||||||| ||||||||    
T  26652631 gttatcagtttagtccttactgttaaaaa 26652603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 27823726 - 27823900
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||| ||||||||| |||  ||||||| ||| |||||  ||||||||||| || ||||  ||||||||| ||||| | |||| ||||||||  |  ||||    
T  27823726 tgaggaaatagtcattttaatccttgattttacacctaactgtcattttaatctccgatccaggataaaatacaataaagtctttgaatgtctatctctg 27823825  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    ||||| ||||||| ||||||||||||||  | |||||| |  |||||||||||| ||| ||| ||||||||||||    
T  27823826 ttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggatcaaattgaaagt 27823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 40207008 - 40206912
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt-ccttaccgttaaaaaactatgttaactcatgatgtgtca 155  Q
    |||||| ||| || || ||| |||||||||||||||||  || |||||||||||||| ||||| |||||||||| |||||||||| |||| ||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaactgatgaggtgtca 40206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 30270735 - 30270808
Alignment:
Q  105 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||||| || ||||||||||| |  | ||||||||  |||||||||||||||| |||||||||| |||||    
T  30270735 tatcagtttaatctttaccgttaaacacttctgttaactggtgatgtgtcaatcataaggaccaaattaaaagt 30270808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 40205950 - 40206023
Alignment:
Q  75 acaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 148  Q
    ||||| |||||  ||||||||||| || ||||||||||||||| ||  |||||||||| |||||||||| ||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaactaatga 40206023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 47118177 - 47118112
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggat 69  Q
    |||| |||| |||||||| |||| ||||| ||||||||| |||||| | |||||||||||||||||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggat 47118112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 17702045 - 17701917
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||||||||||||||||| |||  ||| | |||| ||||||||||| |  ||||| |||||| ||| || ||||||  ||||| ||| | ||||| || |    
T  17702045 tgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccg 17701946  T
Q  104 ttatcagtttagtccttaccgttaaaaaa 132  Q
    |||||| |||||||| |  ||||||||||    
T  17701945 ttatcactttagtccctgacgttaaaaaa 17701917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 48572987 - 48573119
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    |||||||||||||||||| ||||| ||||||||| | |||  |  ||||| |||||||||| || ||||||  || |  ||| | ||||| || ||||||    
T  48572987 aaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttatc 48573086  T
Q  109 agtttagtccttaccgttaaaaaactatgttaa 141  Q
    | ||||||||||  |||||||||| | ||||||    
T  48573087 actttagtccttgacgttaaaaaaatttgttaa 48573119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 132
Target Start/End: Original strand, 17700520 - 17700643
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    ||||||||||||| ||| |||||| ||||||||| |||||  |  || || |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  17700520 aaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 17700619  T
Q  109 agtttagtccttaccgttaaaaaa 132  Q
    | |||||||| |  ||||||||||    
T  17700620 actttagtccctgacgttaaaaaa 17700643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 20464586 - 20464543
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtca 48  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||    
T  20464586 gagtaaatagtcactttagtccttgactctgcaccttgctgtca 20464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||| |||||||||||||||||  ||||| ||||| |||||||||  |   |||| |||||||||| || ||||||  ||||| ||| | ||||| ||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatg 150  Q
     ||| | |||||||| |  |||||||||| | |||||| | ||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 40317838 - 40317874
Alignment:
Q  75 acaaaatagtccttgaatgtgcacatctgttatcagt 111  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  40317838 acaaagtagtccttgaatgtgcacttctgttatcagt 40317874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 8484331 - 8484158
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 104  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||| | |||| ||||||| | ||||||||| |||||||||| |||||||| | || |||    
T  8484331 gagtaaatagtcactttggtctctgattttgcacctcgttgtcactctagttcccgacttaagataaactataaaatagtccatgaatgtgtaaatttgt 8484232  T
Q  105 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    |||||||||||| |||||||||||||   | |||||||    |||||||||||||||||||| |||||||||||    
T  8484231 tatcagtttagtacttaccgttaaaattttctgttaaccgcagatgtgtcaatcatagggactaaattgaaagt 8484158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 8077722 - 8077545
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||||||||||||| ||||||||   ||||| ||||||| ||||| ||||||| ||||||||||||||| || |||||| |   |||||||| | |||||    
T  8077722 tgagtaaatagtcattttggtccccaactttacacctcgttgtcactttagtctccgactcaggataaattataaaataatttctgaatgtgtagatctg 8077623  T
Q  104 ttatcagtttagtcctt---accgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 178  Q
    ||||| |||||||||||   |||||| ||||| |||||||||   ||||||||||||||||| ||||||||| |||||    
T  8077622 ttatctgtttagtccttataaccgttgaaaaattatgttaacgactgatgtgtcaatcatagagaccaaattaaaagt 8077545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 8075482 - 8075601
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 102  Q
    |||||||||||||||||| ||||||||||||| ||||  | ||| | ||||||| |||||| | |||||||||||||||| |||||||||||| | ||||    
T  8075482 ttgagtaaatagtcactt-ggtccttgactttacaccatgttgttactttagtctccgacttatgataaactacaaaataatccttgaatgtgtagatct 8075580  T
Q  103 gttatcagtttagtccttacc 123  Q
    |||||||||||||||||||||    
T  8075581 gttatcagtttagtccttacc 8075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 48646047 - 48646194
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 104  Q
    |||||||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | | ||| || ||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  105 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    ||||| |||||||  |  |||||||||| ||| |||| | ||||||||    
T  48646147 tatcactttagtctctgtcgttaaaaaaatatattaagtgatgatgtg 48646194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 35727693 - 35727843
Alignment:
Q  1 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 100  Q
    ||||||| ||| |||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || || |||  ||||  ||| | |||||||    
T  35727693 ttttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacat 35727792  T
Q  101 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    | ||||||| ||||||||| | ||||||||| || |||||| | ||||||||    
T  35727793 ccgttatcactttagtcctga-cgttaaaaatctctgttaagtgatgatgtg 35727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||| |||||||||||||||||| ||||| | ||||||| |||||  |  |||||  ||||||||| || ||||||  ||||  ||| | ||||| ||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgt 151  Q
    |||||| |||||||| |  |||||||||| | |||||| | |||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 48788793 - 48788754
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtca 48  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtca 48788754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 44333141 - 44333282
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    |||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||| ||| || ||||||  ||||  ||| | ||||| || ||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  109 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    |   ||||||||  |||||||||| | |||||| | ||||||||    
T  44333241 a--ctagtccttgacgttaaaaaaatctgttaagtgatgatgtg 44333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 384934 - 385001
Alignment:
Q  88 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtca 155  Q
    ||||||||||| || ||| |||||||||||  ||||||||||||| ||||||| || |||| ||||||    
T  384934 tgaatgtgcacttccgttctcagtttagtctctaccgttaaaaaattatgttagctaatgaggtgtca 385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 385739 - 385693
Alignment:
Q  2 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 48  Q
    ||||||||||| ||||||||||||||||||| |||| |||| |||||    
T  385739 tttgagtaaatggtcactttggtccttgactctgcatctcgttgtca 385693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 21062813 - 21062859
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcat 49  Q
    ||||| |||| |||||||| |||| ||||||||||||||||||||||    
T  21062813 ttgagaaaatggtcactttagtccctgactttgcacctcgctgtcat 21062859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 24381961 - 24381895
Alignment:
Q  273 ttttgaaattttcaattataat-tacctttttactcatataagactacaacattaggcaatagaatt 338  Q
    ||||||||| ||||| || ||| |||| |||| |||||||||||||||||||||| |||||| ||||    
T  24381961 ttttgaaatgttcaaatagaatgtacccttttcctcatataagactacaacattatgcaatataatt 24381895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 10899199 - 10899155
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtca 48  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||    
T  10899199 tgagtaaattgttactttggtccctgactctgcacctcgctgtca 10899155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 24844627 - 24844683
Alignment:
Q  61 actcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 117  Q
    ||||||||| || |||||| ||||| |||||||||||| ||  ||||||||||||||    
T  24844627 actcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 32766365 - 32766237
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  104 ttatcagtttagtccttaccgttaaaaaa 132  Q
    |||||| ||||||||||  ||||||||||    
T  32766265 ttatcactttagtccttgacgttaaaaaa 32766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 31091648 - 31091505
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    |||||||||||||||||| ||||| ||||||| |||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  109 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    | |||||||  |  |||||||||| |||||||| | ||||||||    
T  31091548 actttagtctctgacgttaaaaaaatatgttaagtgatgatgtg 31091505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 117
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    ||||||||| ||||||||||||| ||||| ||||  |||| ||||     ||||| || ||| ||| || |||||| |||||| ||||||||||| ||||    
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  104 ttatcagtttagtc 117  Q
    ||||||||||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 12746329 - 12746213
Alignment:
Q  2 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatc 101  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||| |    || || |||||||||| || |||||| |||| | ||||||||| | ||    
T  12746329 tttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttc 12746230  T
Q  102 tgttatcagtttagtcc 118  Q
     ||||||| ||||||||    
T  12746229 cgttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 15442041 - 15441949
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    |||||||||| || |||||| |||||||||||||||||| | | |||||| |||||||  ||  |||||| || | |||||||| ||||||||    
T  15442041 gactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaactgatgatgtg 15441949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 38853808 - 38853896
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 148  Q
    |||||||||| || |||||| |||||| | ||||||||| || ||||||| |||||||  |  ||||||| || |||||||||||||||    
T  38853808 gactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 5428361 - 5428393
Alignment:
Q  7 gtaaatagtcactttggtccttgactttgcacc 39  Q
    |||||| ||||||||||||||||||||||||||    
T  5428361 gtaaatggtcactttggtccttgactttgcacc 5428393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 32764935 - 32765082
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    |||||||||||||||||| |||| ||| | |||| || | |||||| |  ||| | |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  104 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    |||||| |||| ||| |  |||||||||| |||||||| | ||||||||    
T  32765035 ttatcactttaatccctgacgttaaaaaa-tatgttaagtgatgatgtg 32765082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  63 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 148  Q
    ||||||| || ||||||||||||  ||||||||||| || ||||||| ||||||||||  ||||||| || |||||||||| ||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 11060910 - 11060796
Alignment:
Q  4 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 103  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||     ||||  ||||||  || || ||||||||||||| |||||| |||| |  |    
T  11060910 tgagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcg 11060811  T
Q  104 ttatcagtttagtcc 118  Q
    |||||| ||||||||    
T  11060810 ttatcactttagtcc 11060796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 7945681 - 7945532
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 102  Q
    ||||| ||||| ||| |||||||| ||||| |||||||||||||||  |  || || |||||||||| || ||||||  ||||  ||| | ||||| ||     
T  7945681 ttgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttcc 7945582  T
Q  103 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    ||||||| |||||||| |  |||||||||| |||| ||| | ||||||||    
T  7945581 gttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatgtg 7945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 1001207 - 1001264
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 117  Q
    ||||| |||| || |||||| |||||  ||||||||||| ||||||||||||||||||    
T  1001207 gactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 534569 - 534517
Alignment:
Q  100 tctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    |||||||||| |||||||| ||||||||||||| | |||||| | ||||||||    
T  534569 tctgttatcactttagtccctaccgttaaaaaaatctgttaagttatgatgtg 534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 117
Target Start/End: Complemental strand, 9538170 - 9538062
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    |||||||||||||||||| ||||| |||| |||| |||||| |  ||||| |||||||||| || ||||||  ||||  ||| ||||||| || ||||||    
T  9538170 aaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttatc 9538071  T
Q  109 agtttagtc 117  Q
    | |||||||    
T  9538070 attttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24900461 - 24900414
Alignment:
Q  1 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 48  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  24900461 ttttgagcaaatagtcactttggtccctgactctgcacctcgctgtca 24900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 4592863 - 4593006
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    ||||||||||||| |||| ||| | || | ||||||||||  | |||||| |||||| ||| || ||||||  ||||| ||| | ||||| || ||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  109 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    | |||||||| |  |||||||||| | |||||| | ||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 4593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 116
Target Start/End: Original strand, 8074453 - 8074560
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    ||||||||||||| |||| ||| | |||| ||||||||||  | |||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  109 agtttagt 116  Q
    | ||||||    
T  8074553 actttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 19182952 - 19183095
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 108  Q
    ||||||| ||||| |  |||||||||||||||||||||||  |  ||| | |||||||||| || ||||||  ||| | ||| | | ||| || ||||||    
T  19182952 aaatagttactttagaacttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatc 19183051  T
Q  109 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 152  Q
    | |||||||||| |  |||||||| |||||||| | ||||||||    
T  19183052 actttagtccttgcgattaaaaaaatatgttaagtgatgatgtg 19183095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 19271416 - 19271483
Alignment:
Q  81 tagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 148  Q
    |||||||| ||||||||| || |||||||||||||||| |  |||||||||  |||||||||| ||||    
T  19271416 tagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaaaatttatgttaactaatga 19271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 16978988 - 16979030
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctg 45  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  16978988 ttgagtagatagtcactttagtccttgactttgcaccttgctg 16979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 28591235 - 28591165
Alignment:
Q  9 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaa 79  Q
    |||||||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 28591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 14891270 - 14891225
Alignment:
Q  3 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 48  Q
    ||||| |||||||||||||||||| | ||| |||||||||||||||    
T  14891270 ttgagcaaatagtcactttggtccctcactctgcacctcgctgtca 14891225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 23772809 - 23772902
Alignment:
Q  6 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 99  Q
    ||||||| ||||||||| ||  ||||||||||||||||| ||||   |||||| ||| || ||| || |||||| |||| | ||||||||||||    
T  23772809 agtaaatggtcactttgatctctgactttgcacctcgctatcataaaagtccctgacacaagattaaatacaaagtagttcctgaatgtgcaca 23772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 26327142 - 26327054
Alignment:
Q  60 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 148  Q
    |||||||||| || || ||||||  ||||| |||||||| || || |||||||||||||||  |||||||||  | |||||||| ||||    
T  26327142 gactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagtccttgacgttaaaaatttctgttaactgatga 26327054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 12676595 - 12676483
Alignment:
Q  5 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 104  Q
    |||||||||||||||||| |   ||||| ||||||||| |||||   | ||| | | |||||||| || |||||| |||||  | ||||||||| | |||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  105 tatcagtttagtc 117  Q
    |||||||||||||    
T  12676495 tatcagtttagtc 12676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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