View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1745_low_3 (Length: 288)
Name: NF1745_low_3
Description: NF1745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1745_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 6916967 - 6916695
Alignment:
| Q |
14 |
aatatacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtat |
113 |
Q |
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| T |
6916967 |
aatatacaagaagcctgccatgattatcacctcatcaca--tttacagtcagaagtgcattgataagtgaacaaaaatctaaactagctgaacaatgtat |
6916870 |
T |
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| Q |
114 |
gatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatattaaatcaagtttcccaataaaaacatt |
213 |
Q |
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| T |
6916869 |
gatagaattgaaaatgagcatgtatgtgtcaactaaaatataagaaaacgcaaatatatgataaatttaatgttaaatcaagtttcccaataaaaacatt |
6916770 |
T |
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| Q |
214 |
ggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacccaaaa |
288 |
Q |
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| T |
6916769 |
ggagtgacaccaaattgtacactatcacaattatagctactttttatttgctttcaaaattttgttgacccaaaa |
6916695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 6890724 - 6890644
Alignment:
| Q |
17 |
atacaagaagcctgccatgattatcacctcatcacagatttacagtcggaagtgcattgataagtgaacaaaaatctaaactagctgaa |
105 |
Q |
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| T |
6890724 |
atacaagaagcctgccatgaatatcacctcat--------tacagtcagaagtacattgacaagtgaaccaaaatctaaactagctgaa |
6890644 |
T |
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