View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17460_high_1 (Length: 409)
Name: NF17460_high_1
Description: NF17460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17460_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 25071000 - 25071379
Alignment:
| Q |
13 |
aatatatcaaggccaatctacatcttcagggaaaggcacattggagatattaattgtcttcccatcaagagaaaccatatcataaggtgaatcttctcca |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25071000 |
aatatatcaaggccaatctacatcttcagggaaaggcacattggagaaattaattgtcttcccatcaagagtaaccatatcataaggtgaatcttctcca |
25071099 |
T |
|
| Q |
113 |
aattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctcatttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25071100 |
aattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctcatttg |
25071199 |
T |
|
| Q |
213 |
aaagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaatattttagtttcggtgcatacaaatgcgacca |
312 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25071200 |
atagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaatattttagttttggtgcatacaaatgcgacca |
25071299 |
T |
|
| Q |
313 |
tacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacatatcaatggccttgattttcatct |
392 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25071300 |
tacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacgtatcaatggccttgattttcatct |
25071379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 25062294 - 25062676
Alignment:
| Q |
13 |
aatatatcaaggccaatctacatcttcagggaaaggcacattggagatattaa---ttgtcttcccatcaagagaaaccatatcataaggtgaatcttct |
109 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
25062294 |
aatatatcaaggccagtctacatcttcagggaaaggcacgttggagtaattaacagttgtcttcccatcaagagaaactatatcataaggtgaatcttct |
25062393 |
T |
|
| Q |
110 |
ccaaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctcat |
209 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
25062394 |
ccaaattcagttggcattagcttccaatatagacttggttcccactctgcttctttgattacattcaatatttcctttgttactatttcactcccctcat |
25062493 |
T |
|
| Q |
210 |
ttgaaagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaatattttagtttcggtgcatacaaatgcga |
309 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||| |||||| |||||| | ||||| || |
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| T |
25062494 |
ttgatagatgaactccatcactaagaaataatcaaaccacctaattaaattacggataaacaaatttgaaacattatagtttaggtgcaaataaatgaga |
25062593 |
T |
|
| Q |
310 |
ccatacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacatatcaatggccttgattttcatct |
392 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||||| |
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| T |
25062594 |
ccatacttacatgaaacaaacatctctccaatcatctcttttctgaattgcagaccacatatcaatgacctttatgttcatct |
25062676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 392
Target Start/End: Original strand, 25083904 - 25084285
Alignment:
| Q |
13 |
aatatatcaaggccaatctacatcttcagggaaaggcacattggagatattaat---tgtcttcccatcaagagaaaccatatcataaggtgaatcttct |
109 |
Q |
| |
|
||||||||||||||| |||||| | ||||| |||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
25083904 |
aatatatcaaggccactctacaccatcaggaaaaggcacatcggagaaattaatatttatcttcccatcaagagaaaccatatcataaggagaatcttct |
25084003 |
T |
|
| Q |
110 |
ccaaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctcat |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | |
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|
| T |
25084004 |
ccaaattcagctggcattaacttccaatatagacttggtttccactctgcttcttcgatgacattcaatatctcttttgttactatttcactccccttgt |
25084103 |
T |
|
| Q |
210 |
ttgaaagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttgtaatattttagtttcggtgcatacaaatgcga |
309 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| || |
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|
| T |
25084104 |
ttgatagatgaactccatcactaagaaataatcaaatcccctaattaaattattgataaacaaatttgaaatattttag-ttaggtgcatacaaatgaga |
25084202 |
T |
|
| Q |
310 |
ccatacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacatatcaatggccttgattttcatct |
392 |
Q |
| |
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| |||||||| |||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
25084203 |
tcgtacttacacgaaacaaacatctctccaatcatctattttctgaattgcagaccacaaatcaatggcctttattttcatct |
25084285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 25089683 - 25089975
Alignment:
| Q |
14 |
atatatcaaggccaatctacatcttcagggaaaggcacattggagatattaa---ttgtcttcccatcaagagaaaccatatcataaggtgaatcttctc |
110 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
25089683 |
atatatcaaggccactctacaccttgaggaaaaggcacattggagaaattaacagttgtcttcccgtcaagagaaaccatatcataaggtgtatcttctc |
25089782 |
T |
|
| Q |
111 |
caaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactatttcactcccctcatt |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25089783 |
caaattcagctggcattaacttacaatatagacttggttcccactctgctttctttatgacattcaatatctcctttgttactatttcactcccctcagt |
25089882 |
T |
|
| Q |
211 |
tgaaagatgaactccatcactaagaaataatcaaaccacctaattaa---attattgaaaaacaaatttgtaatattttagtttcggtgcata |
300 |
Q |
| |
|
||| | ||| |||||||||||||||||||||||||||||| || ||| |||||||| |||||||||| || ||||||| || |||||||| |
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|
| T |
25089883 |
tgataaatgtactccatcactaagaaataatcaaaccaccaaactaaattattattgataaacaaatttaaaacattttagattaggtgcata |
25089975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 98 - 390
Target Start/End: Original strand, 25058166 - 25058464
Alignment:
| Q |
98 |
ggtgaatcttctccaaattcagctggcattaacttccaatatagacttggttcccactctgcttctttgatgacattcaatatctcctttgttactattt |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| || || | ||| ||||||| || |||| |
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|
| T |
25058166 |
ggtgaatcttctccaaattcaactggcattgtcttccaatatagatttggttcccactctgcttctttgataaccttaattatttcctttgacaccattt |
25058265 |
T |
|
| Q |
198 |
cactcccctcatttgaaagatgaactccatcactaagaaataatcaaaccacctaattaaattattgaaaaacaaatttg-ta-atatt--ttagtttcg |
293 |
Q |
| |
|
||||||||||| || | ||||| ||||||||||| |||||| |||| || |||||||||| ||||||| |||||||| || ||||| ||| | | | |
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|
| T |
25058266 |
cactcccctcagcagagaaatgaattccatcactaaaaaataaccaaatcatctaattaaatcattgaaatgcaaatttgatatatatttattaatatag |
25058365 |
T |
|
| Q |
294 |
gtgcatac--aaatgcgaccatacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacatatcaatggccttgattttcat |
390 |
Q |
| |
|
| ||||| | ||| || || |||||||||||||||| ||| |||||||||||||| | |||||| |||||||| ||||||||||||||| ||||| |
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|
| T |
25058366 |
ggacatacatatatgagagcacacttacatgaaacaaacttctttccaatcatctcttctctgaattaaagaccacaaatcaatggccttgatgttcat |
25058464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 311 - 392
Target Start/End: Original strand, 25090496 - 25090577
Alignment:
| Q |
311 |
catacttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacatatcaatggccttgattttcatct |
392 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||| | |||||||||||||||||||||| |||| |||||||||| |
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|
| T |
25090496 |
catacttacatgaaacaaacatctttccaatcatctcttttctaaattgcagaccacatatcaatgacctttattttcatct |
25090577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 25094680 - 25094758
Alignment:
| Q |
314 |
acttacatgaaacaaaaatctctccaatcatctcttttttgaattgcagaccacatatcaatggccttgattttcatct |
392 |
Q |
| |
|
|||||| |||| |||| || || ||| | ||| |||||||| ||||||||||||| ||||||||||||||| ||||||| |
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| T |
25094680 |
acttacgtgaagcaaacatttcgccagttatcccttttttggattgcagaccacagatcaatggccttgatattcatct |
25094758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 25094464 - 25094504
Alignment:
| Q |
95 |
taaggtgaatcttctccaaattcagctggcattaacttcca |
135 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||| |
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|
| T |
25094464 |
taaggtgaatcttctccaaattcatctggcagtgacttcca |
25094504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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