View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17460_high_2 (Length: 259)
Name: NF17460_high_2
Description: NF17460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17460_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 20148953 - 20149150
Alignment:
| Q |
7 |
ttttgaatactactacaagtctactaccttgaattttaagataatattgaattttattttaagataagctacattgaannnnnnnnncttctttctacca |
106 |
Q |
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| T |
20148953 |
ttttgaatactactacaagtctactaccttgaattttaagataatattgaattttattttatgataacctacattgaatttttttttcttctttctacca |
20149052 |
T |
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| Q |
107 |
taccctagtttcaaaaaataatattgatctcacaacctcactatagataatattcataaggtaagccgattttatcattcacaatcttcgcttccaagc |
205 |
Q |
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| T |
20149053 |
tacccttgtttcaaaaaataatattgatctcacaacctcactatagataatattcataa-gttagccgattttatcatttacaatcttcgctcccaagc |
20149150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 44326371 - 44326568
Alignment:
| Q |
7 |
ttttgaatactactacaagtctactaccttgaattttaagataatattgaattttattttaagataagctacattgaannnnnnnnncttctttctacca |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
44326371 |
ttttgaatactactacaagtctactaccttgaattttaagataatattgaattttattttatgataacctacattgaatttttttttcttctttctacca |
44326470 |
T |
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| Q |
107 |
taccctagtttcaaaaaataatattgatctcacaacctcactatagataatattcataaggtaagccgattttatcattcacaatcttcgcttccaagc |
205 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||| |
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| T |
44326471 |
tacccttgtttcaaaaaataatattgatctcacaacctcactatagataatattcataa-gttagccgattttatcatttacaatcttcgctcccaagc |
44326568 |
T |
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