View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17461_high_2 (Length: 351)
Name: NF17461_high_2
Description: NF17461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17461_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 10194107 - 10194428
Alignment:
| Q |
30 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcaacatggaacttatc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
10194107 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaact-----gaatcaattgcattcactgcaacatggaacttatc |
10194201 |
T |
|
| Q |
130 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10194202 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatc |
10194301 |
T |
|
| Q |
230 |
ataaatcgcaaattataattgaca---------agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
320 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10194302 |
ataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
10194401 |
T |
|
| Q |
321 |
tctttaaatgcgttacttattcaaaat |
347 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10194402 |
tctttaaatgcgttacttattcaaaat |
10194428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University