View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17462_high_10 (Length: 295)

Name: NF17462_high_10
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17462_high_10
NF17462_high_10
[»] chr1 (2 HSPs)
chr1 (11-108)||(5756191-5756288)
chr1 (214-295)||(5756394-5756475)
[»] chr5 (1 HSPs)
chr5 (8-82)||(6176803-6176877)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 5756191 - 5756288
Alignment:
Q  11 cagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtgatgtatttttgttaattttctagcat 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5756191 cagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtgatgtatttttgttaattttctagcat 5756288  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 5756394 - 5756475
Alignment:
Q  214 agacagataaagcttcaatgttagatgaggccattgaatatttaaagcagcttcagcttcaagtgcaagtgagttttctttc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5756394 agacagataaagcttcaatgttagatgaggccattgaatatttaaagcagcttcagcttcaagtgcaagtgagttttctttc 5756475  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 6176803 - 6176877
Alignment:
Q  8 gagcagagaaggaggagtaagattaatgagaaattgaaagccttacaaaatttaattccaaattctaacaaggtg 82  Q
    ||||||||||| ||||||| ||| ||||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  6176803 gagcagagaagaaggagtaggatcaatgagaaaatgaaagctttacaaaatctaattccaaattctaacaaggtg 6176877  T

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