View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17462_high_5 (Length: 415)
Name: NF17462_high_5
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 46939331 - 46939742
Alignment:
| Q |
18 |
aaaactatgattgattttgcatcattagtatttgactgcgattatgtgcaatattatagatttcaaatctaaaatcttgttgacatt-aaatactaaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| |
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| T |
46939331 |
aaaactatgattgattttgcatcattagtatttgactgcgattatgtgcaatattatagattccaaatctaaaattttgttgacatttaaatactaaatt |
46939430 |
T |
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| Q |
117 |
agttttgatgaagtgaaatgaacaaactaacatcttaattaat------------------atataaatagagatgtgaaaattaaagcataattagcat |
198 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46939431 |
agttttgatgcagtgaaatgaacaaactaacatcttaattaatttaatggtaataataaatatataaatagagatgtgaaaattaaagcataattagcat |
46939530 |
T |
|
| Q |
199 |
ataccttcttaatgttatgagcaatgtgtttggagctaaactcctcaagactatcatatgtccttcttgcacaacgaaaagcatgcacttgcatgaaact |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46939531 |
ataccttcttaatgttatgagcaatgtgtttggagctaaactcctcaagactatcatatgtccttcttgcacaacgaaaagcatgcacttgcatgaaact |
46939630 |
T |
|
| Q |
299 |
tggcatgtctgagaccaaaaccttcacttgaagtttttcaataacagaagacaatgtttcaatatgggacactgattttcttgcctcaacaaatttacct |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46939631 |
tggcatgtctgagaccaaaaccttcacttgaagtttttcaataacagaagacaatgtttcaatatgggacactgattttcttgcctcaacaaatttacct |
46939730 |
T |
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| Q |
399 |
acctttgcttct |
410 |
Q |
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|||||| ||||| |
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| T |
46939731 |
accttttcttct |
46939742 |
T |
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