View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17462_low_1 (Length: 615)
Name: NF17462_low_1
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 560; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 600
Target Start/End: Complemental strand, 1831950 - 1831358
Alignment:
| Q |
8 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831950 |
gagcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
1831851 |
T |
|
| Q |
108 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1831850 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
1831751 |
T |
|
| Q |
208 |
cattgttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatggg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1831750 |
cattgttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatgga |
1831651 |
T |
|
| Q |
308 |
gttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgcnnnnnnnttgacgatgagcttgaaactgatatt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1831650 |
gttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgcaaaaaaattgacgatgagcttgaaactgatatt |
1831551 |
T |
|
| Q |
408 |
gagtgtaagccataccaagatatctatgatatggtatatgatactattttctgtaacaatagcctaaagttgcctacaattggttcgtaataacaaaact |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1831550 |
gagtgtaagccataccaagatatctatgatatggtatatgatactattttctgtaacaatagcctaaagttgcctacaattggttcgtaataacaaaact |
1831451 |
T |
|
| Q |
508 |
ttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtctgtgtaacaataagtggtagccaccaatgtattcatgtatat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1831450 |
ttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtctgtgtaacaataagtggtagccaccaatgtattcatgtatat |
1831358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 600
Target Start/End: Complemental strand, 1866393 - 1865801
Alignment:
| Q |
8 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1866393 |
gagcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
1866294 |
T |
|
| Q |
108 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1866293 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattacta |
1866194 |
T |
|
| Q |
208 |
cattgttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatggg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1866193 |
cattgttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatgga |
1866094 |
T |
|
| Q |
308 |
gttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgcnnnnnnnttgacgatgagcttgaaactgatatt |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1866093 |
gttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgcaaaaaaattgacgatgagcttgaaactgatatt |
1865994 |
T |
|
| Q |
408 |
gagtgtaagccataccaagatatctatgatatggtatatgatactattttctgtaacaatagcctaaagttgcctacaattggttcgtaataacaaaact |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865993 |
gagtgtaagccataccaagatatctatgatatggtatatgatactattttctgtaacaatagcctaaagttgcctacaattggttcgtaataacaaaact |
1865894 |
T |
|
| Q |
508 |
ttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtctgtgtaacaataagtggtagccaccaatgtattcatgtatat |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1865893 |
ttcattcagtcatgtattcgtcgatttttcatgttttgccaagtatatgtctgtgtaacaataagtggtagccaccaatgtattcatgtatat |
1865801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 2534317 - 2534169
Alignment:
| Q |
8 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
107 |
Q |
| |
|
||||||| ||||| |||||||| |||||| ||||| ||||||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||| |
|
|
| T |
2534317 |
gagcagaaacaatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaa |
2534218 |
T |
|
| Q |
108 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataattt |
156 |
Q |
| |
|
||||||| || |||| |||||||||||||| | || ||||||||||| |
|
|
| T |
2534217 |
tcctcgaaatttcactgaactcaccgacacatttgcaccctaataattt |
2534169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 2543495 - 2543412
Alignment:
| Q |
291 |
tgatctataattatggggttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgc |
374 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
2543495 |
tgatctataattattgggttgttaacattaacaaggatgatttgctcaaatgtaatatgttttgcataacctaatccaccctgc |
2543412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 2543761 - 2543613
Alignment:
| Q |
8 |
gagcagagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaa |
107 |
Q |
| |
|
||||||| ||||| |||||||| |||||| ||||| ||||||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||| |
|
|
| T |
2543761 |
gagcagaaacaatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaa |
2543662 |
T |
|
| Q |
108 |
tcctcgatatgtcacatcactcaccgacacatctccagcctaataattt |
156 |
Q |
| |
|
|||| || || |||| |||||||||||||| | || ||||||||||| |
|
|
| T |
2543661 |
tccttgaaatttcactgaactcaccgacacatttgcaccctaataattt |
2543613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 294 - 374
Target Start/End: Complemental strand, 2566421 - 2566341
Alignment:
| Q |
294 |
tctataattatggggttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgc |
374 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||| ||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2566421 |
tctataattattgggttcttaacattactaaggatgatttgttcaaatgtaatctgtcttgcataacctgatccaccctgc |
2566341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 2556836 - 2556730
Alignment:
| Q |
16 |
acaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgat |
115 |
Q |
| |
|
||||| || |||||||||||| |||||| | |||||||||||||| ||||||||| | || ||||| | | |||| |||||||| ||||||||||||| |
|
|
| T |
2556836 |
acaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgat |
2556737 |
T |
|
| Q |
116 |
atgtcac |
122 |
Q |
| |
|
||||||| |
|
|
| T |
2556736 |
atgtcac |
2556730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 2556561 - 2556484
Alignment:
| Q |
297 |
ataattatggggttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccctgc |
374 |
Q |
| |
|
|||||||| |||||| |||||||| |||||| | ||| ||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2556561 |
ataattattgggttcataacattactaaggatgacttgctcaaatgtaatctgtcttgcataacctgatccaccctgc |
2556484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 2566662 - 2566546
Alignment:
| Q |
16 |
acaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgat |
115 |
Q |
| |
|
||||| || |||||||||||| |||| ||| |||||||| ||||| ||||||||| | || ||||| | | |||| ||||||||| |||||||||||| |
|
|
| T |
2566662 |
acaatgttattttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgat |
2566563 |
T |
|
| Q |
116 |
atgtcacatcactcacc |
132 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
2566562 |
atgtcacagaactcacc |
2566546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 2551148 - 2551104
Alignment:
| Q |
94 |
gaagttccagtaaatcctcgatatgtcacatcactcaccgacaca |
138 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2551148 |
gaagttccggtaaatcctcgatatgtcacatctctcaccgacaca |
2551104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 2550988 - 2550907
Alignment:
| Q |
291 |
tgatctataattatggggttcttaacattaacaaggataatttggtcatatgtaatatgtcttgcataacctgatccaccct |
372 |
Q |
| |
|
|||||||| ||||| |||||| ||||||| ||||| | ||| || ||| |||| || | ||| ||||||||||||||||||| |
|
|
| T |
2550988 |
tgatctattattatcgggttcataacattgacaagcacaatatgctcaaatgttatttttctagcataacctgatccaccct |
2550907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 2546780 - 2546748
Alignment:
| Q |
109 |
cctcgatatgtcacatcactcaccgacacatct |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
2546780 |
cctcgatatgttacatcactcaccgacacatct |
2546748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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