View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17462_low_14 (Length: 279)
Name: NF17462_low_14
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 25420023 - 25419876
Alignment:
| Q |
12 |
atgaagctttgaacctttgagggttttgtatttgtaaattgaacacgtcaaggtttaagggtct-agaacttgaagaagaagaatcttctaattaacaac |
110 |
Q |
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| T |
25420023 |
atgaagctttgaacctttgagggttttgtatttgtaaattgaacacgtcaaggtttaagggtctaagaactt---gaagaagaaccttctaattaacaac |
25419927 |
T |
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| Q |
111 |
ccaaaaccttttttgctttgaagaaaacccaaccttacggaaaatgaaaaat |
162 |
Q |
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| T |
25419926 |
ccaaaaccttttttgctttgaag-aaacccaaccttacggaaaatgaaaaat |
25419876 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 25416434 - 25416361
Alignment:
| Q |
162 |
tggtatgtaaaataaacgtgtatttttcgtattagagcaagtgtcaatcttaaaataaaagtaaaattctctcc |
235 |
Q |
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| T |
25416434 |
tggtatgtaaaataaacgtgtatttttcgtattagagcaagtgtaaatcttaaaataaaagtaaaattctctcc |
25416361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 17580743 - 17580778
Alignment:
| Q |
192 |
attagagcaagtgtcaatcttaaaataaaagtaaaa |
227 |
Q |
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| T |
17580743 |
attagagcaagtgtcaatcttaaaacaaaagtaaaa |
17580778 |
T |
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