View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17462_low_16 (Length: 241)

Name: NF17462_low_16
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17462_low_16
NF17462_low_16
[»] chr6 (11 HSPs)
chr6 (21-241)||(8752616-8752836)
chr6 (20-241)||(1256736-1256957)
chr6 (21-241)||(8745455-8745675)
chr6 (21-241)||(2956051-2956271)
chr6 (21-241)||(1258253-1258476)
chr6 (21-120)||(19084057-19084156)
chr6 (65-120)||(19082733-19082788)
chr6 (204-241)||(8745738-8745775)
chr6 (204-241)||(8752073-8752110)
chr6 (204-241)||(2955951-2955988)
chr6 (209-241)||(1258153-1258185)
[»] chr4 (33 HSPs)
chr4 (21-238)||(48713281-48713498)
chr4 (21-241)||(54123361-54123581)
chr4 (20-237)||(42977220-42977437)
chr4 (21-241)||(10337127-10337346)
chr4 (20-240)||(42978736-42978956)
chr4 (35-239)||(54121864-54122068)
chr4 (21-241)||(32082447-32082669)
chr4 (21-241)||(10337984-10338206)
chr4 (20-238)||(48711880-48712098)
chr4 (69-241)||(16879229-16879401)
chr4 (21-120)||(19994521-19994620)
chr4 (20-120)||(55948890-55948990)
chr4 (21-120)||(19995991-19996090)
chr4 (21-120)||(44251628-44251727)
chr4 (23-120)||(44253129-44253226)
chr4 (21-120)||(18597655-18597754)
chr4 (21-120)||(55947383-55947482)
chr4 (76-147)||(16880399-16880470)
chr4 (65-120)||(53355167-53355222)
chr4 (21-56)||(18597855-18597890)
chr4 (33-135)||(22307706-22307808)
chr4 (96-145)||(42226630-42226679)
chr4 (204-241)||(42978627-42978664)
chr4 (204-241)||(54122141-54122178)
chr4 (204-241)||(54123261-54123298)
chr4 (30-110)||(21354723-21354803)
chr4 (21-89)||(24919075-24919143)
chr4 (66-117)||(39654614-39654665)
chr4 (31-135)||(42889733-42889836)
chr4 (204-238)||(10337887-10337921)
chr4 (171-241)||(33609158-33609228)
chr4 (204-241)||(16879471-16879508)
chr4 (209-241)||(32082347-32082379)
[»] chr2 (18 HSPs)
chr2 (21-241)||(28563399-28563619)
chr2 (21-241)||(45499328-45499548)
chr2 (21-241)||(40303316-40303536)
chr2 (24-120)||(1841692-1841788)
chr2 (21-120)||(13947771-13947869)
chr2 (21-120)||(14088960-14089058)
chr2 (21-120)||(1840180-1840279)
chr2 (21-137)||(40304682-40304798)
chr2 (21-137)||(45492952-45493068)
chr2 (21-137)||(45500694-45500810)
chr2 (13-135)||(38729984-38730107)
chr2 (66-241)||(44097167-44097342)
chr2 (20-119)||(16142248-16142347)
chr2 (34-128)||(38728220-38728314)
chr2 (30-112)||(16143541-16143623)
chr2 (20-112)||(22053147-22053238)
chr2 (21-112)||(7317413-7317504)
chr2 (30-135)||(15346896-15347001)
[»] chr5 (30 HSPs)
chr5 (23-241)||(36619569-36619788)
chr5 (20-241)||(39103227-39103448)
chr5 (21-241)||(8872543-8872762)
chr5 (21-237)||(8874094-8874310)
chr5 (21-241)||(39101738-39101958)
chr5 (21-237)||(36621050-36621262)
chr5 (21-241)||(38624739-38624959)
chr5 (76-237)||(5225428-5225589)
chr5 (23-120)||(30333944-30334041)
chr5 (30-241)||(11772516-11772727)
chr5 (157-241)||(5224886-5224970)
chr5 (21-120)||(1418873-1418972)
chr5 (21-120)||(25916215-25916314)
chr5 (21-120)||(30332306-30332405)
chr5 (21-139)||(17554921-17555040)
chr5 (33-137)||(38626090-38626194)
chr5 (66-197)||(12250437-12250567)
chr5 (21-120)||(25914514-25914612)
chr5 (65-120)||(1417477-1417533)
chr5 (30-119)||(27756723-27756812)
chr5 (204-241)||(36620946-36620983)
chr5 (204-241)||(39102021-39102058)
chr5 (204-240)||(8873993-8874029)
chr5 (160-211)||(28592239-28592290)
chr5 (21-119)||(16308588-16308687)
chr5 (191-241)||(39103127-39103177)
chr5 (204-241)||(5225040-5225077)
chr5 (204-237)||(8872825-8872858)
chr5 (66-141)||(12251299-12251375)
chr5 (213-241)||(36619851-36619879)
[»] chr1 (26 HSPs)
chr1 (21-241)||(41668296-41668516)
chr1 (65-237)||(19250982-19251154)
chr1 (21-235)||(19249343-19249555)
chr1 (21-120)||(7655201-7655300)
chr1 (21-120)||(28920592-28920691)
chr1 (21-120)||(16673193-16673292)
chr1 (21-138)||(33259291-33259408)
chr1 (21-138)||(33279450-33279567)
chr1 (21-120)||(36145367-36145466)
chr1 (21-120)||(28919106-28919205)
chr1 (21-120)||(33257904-33258002)
chr1 (21-120)||(33278076-33278174)
chr1 (21-120)||(7653709-7653808)
chr1 (21-120)||(36146849-36146947)
chr1 (21-135)||(19057789-19057903)
chr1 (21-119)||(50316988-50317086)
chr1 (87-222)||(10611651-10611792)
chr1 (65-120)||(16672722-16672777)
chr1 (20-120)||(22684087-22684187)
chr1 (21-119)||(24438885-24438984)
chr1 (21-57)||(16592044-16592080)
chr1 (209-241)||(19250762-19250794)
chr1 (32-119)||(13211050-13211137)
chr1 (204-241)||(41668579-41668616)
chr1 (184-225)||(41925305-41925346)
chr1 (21-57)||(31321032-31321068)
[»] chr3 (16 HSPs)
chr3 (21-203)||(31656976-31657159)
chr3 (21-241)||(40499068-40499288)
chr3 (21-241)||(31796650-31796870)
chr3 (21-241)||(41083087-41083307)
chr3 (21-241)||(48568346-48568566)
chr3 (23-120)||(53527995-53528092)
chr3 (21-120)||(33732988-33733087)
chr3 (21-120)||(33734439-33734538)
chr3 (21-138)||(53529453-53529570)
chr3 (21-137)||(41081825-41081941)
chr3 (21-137)||(31795396-31795512)
chr3 (21-137)||(48567019-48567135)
chr3 (30-138)||(30700328-30700436)
chr3 (204-241)||(31657236-31657273)
chr3 (173-241)||(41881469-41881537)
chr3 (32-110)||(41879958-41880036)
[»] chr7 (35 HSPs)
chr7 (66-225)||(30792662-30792821)
chr7 (21-241)||(46245145-46245365)
chr7 (68-215)||(9532456-9532603)
chr7 (21-120)||(21716556-21716655)
chr7 (21-120)||(40028480-40028579)
chr7 (21-120)||(45276432-45276531)
chr7 (21-120)||(45277904-45278003)
chr7 (21-120)||(8231571-8231670)
chr7 (21-116)||(31392081-31392176)
chr7 (21-120)||(31393596-31393695)
chr7 (21-120)||(8230093-8230192)
chr7 (21-120)||(21715095-21715194)
chr7 (21-120)||(4675734-4675832)
chr7 (21-119)||(12180577-12180675)
chr7 (21-137)||(46246495-46246611)
chr7 (21-120)||(40029966-40030065)
chr7 (65-120)||(14774579-14774634)
chr7 (65-120)||(15225032-15225087)
chr7 (21-191)||(21914510-21914674)
chr7 (66-120)||(15135446-15135500)
chr7 (65-120)||(32881183-32881238)
chr7 (21-119)||(13420224-13420322)
chr7 (182-238)||(37132019-37132075)
chr7 (30-138)||(11671205-11671313)
chr7 (67-126)||(21914398-21914457)
chr7 (188-237)||(11747582-11747631)
chr7 (30-112)||(12178515-12178597)
chr7 (30-120)||(37133586-37133676)
chr7 (173-241)||(11670016-11670084)
chr7 (86-225)||(30791335-30791475)
chr7 (65-120)||(32882652-32882707)
chr7 (21-120)||(15136877-15136975)
chr7 (30-120)||(37131867-37131957)
chr7 (205-241)||(30791563-30791599)
chr7 (209-241)||(31734571-31734603)
[»] scaffold0633 (1 HSPs)
scaffold0633 (21-125)||(6826-6930)
[»] chr8 (9 HSPs)
chr8 (21-120)||(25264363-25264462)
chr8 (21-120)||(25265842-25265941)
chr8 (81-241)||(31917062-31917222)
chr8 (21-120)||(33295383-33295481)
chr8 (20-120)||(33293961-33294062)
chr8 (21-119)||(3157975-3158073)
chr8 (21-135)||(39885998-39886112)
chr8 (67-232)||(41912540-41912705)
chr8 (21-135)||(39884639-39884753)
[»] scaffold0489 (1 HSPs)
scaffold0489 (21-120)||(6752-6851)
[»] scaffold1176 (1 HSPs)
scaffold1176 (20-112)||(2073-2165)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 8752836 - 8752616
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8752836 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgcaagttaataaccttttgcttttcgtccctcccgtcaa 8752737  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    ||| |||| |||||| | ||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8752736 actttgttacaaaaacgtcttgctggctaacggtgagtgacgtggcagatgctgacttggccaaacacgtttatgtggactgacagatgatccctgacta 8752637  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  8752636 tattacagggaccaaaaccaa 8752616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 1256736 - 1256957
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  1256736 ttgtaatttggcgtgtttttggttttcgtccctgtatctttttttattctaaaacaacccctataagttaataactttttacttttcgtccctcccgtca 1256835  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 219  Q
    ||||||||| |||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1256836 aactctgttacaaaaatgccttgctgactaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 1256935  T
Q  220 atattacagggaccaaaaccaa 241  Q
    ||||||||||||||||||||||    
T  1256936 atattacagggaccaaaaccaa 1256957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 8745455 - 8745675
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||| ||||       |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  8745455 tgtaatttggcgtgtttttggttttcgtccctatatctttttttgttctaaaacaacccccgtaagttaataactttttgcttttcgtccctcccgtcaa 8745554  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||| ||||||||||| ||| |||||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  8745555 actctgttacaaaaacgccttgctggctaacggtgagtgatgtggcaggtgctaacttggccaaacacgcttatgtggactgacggatgatccctgacta 8745654  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  8745655 tattacagggaccaaaaccaa 8745675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 2956271 - 2956051
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||  ||||||||||||||||||| ||||||       ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||    
T  2956271 tgtaatttgatgtgtttttggttttcgtccttgtatctttttttgttctaaaacaactcccgtaagttaataactttttgcttttcgtccctcccgtcaa 2956172  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||| ||||| ||| | ||   ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2956171 actctgttacaaaaacgccttactgactaaagatgagtgacgtggcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 2956072  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  2956071 tattacagggaccaaaaccaa 2956051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 1258476 - 1258253
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataacctttt-gcttttcgtccctcccgtca 119  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||    
T  1258476 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataggttaataaactttttgcttttcgtccctcccgtca 1258377  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgac- 218  Q
    ||||||||| |||||| ||||| ||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  1258376 aactctgttacaaaaacgccttcctgactaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgacc 1258277  T
Q  219 -tatattacagggaccaaaaccaa 241  Q
      ||||||||||||||||| ||||    
T  1258276 tcatattacagggaccaaagccaa 1258253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 19084156 - 19084057
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||| |||||||||||||||| |||||||||||       |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  19084156 tgtaatttagcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtatgttaataactttttgattttcgtccctcccgtcaa 19084057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 19082733 - 19082788
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||    
T  19082733 gttctaaaacaacccatataagttaataactttttgattttcgtccctcccgtcaa 19082788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 8745738 - 8745775
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  8745738 cagaagatccctgactatattacagggaccaaaaccaa 8745775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 8752073 - 8752110
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  8752073 cagaagatccctgactatattacagggaccaaaaccaa 8752110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 2955988 - 2955951
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  2955988 cagaagatccctgactatattacatggaccaaaaccaa 2955951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 1258185 - 1258153
Alignment:
Q  209 gatccctgactatattacagggaccaaaaccaa 241  Q
    |||| ||||||||||||||||||||||||||||    
T  1258185 gatcactgactatattacagggaccaaaaccaa 1258153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 48713498 - 48713281
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48713498 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctccagtcaa 48713399  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||| ||||||||| | ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48713398 actctgttacaaaaacgccttgctgactaacggtgagtgacgtagcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 48713299  T
Q  221 tattacagggaccaaaac 238  Q
    ||||||||||||||||||    
T  48713298 tattacagggaccaaaac 48713281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 54123581 - 54123361
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||| ||||||||||||||||||||||||        ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  54123581 tgtaatttggcatgtttttggttttcgtccctgtatatttttttgttctaaaacaactcctgtaagttaataactttttgcttttcgtccctcccgtcaa 54123482  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||  |||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54123481 actctgtaacaaaaacgccttgctggctaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 54123382  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  54123381 tattacagggaccaaaaccaa 54123361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 42977220 - 42977437
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  42977220 ttgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccatttaagttaataactttttgcttttcgtccctcccgtca 42977319  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 219  Q
    ||||||||| |||||| ||||||||||| ||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  42977320 aactctgttacaaaaacgccttgctggctaacggtgagtgacttggcaggtgctgacttggtcaaacacgcttatgtggactgacagatgatccttgact 42977419  T
Q  220 atattacagggaccaaaa 237  Q
     |||||||||||||||||    
T  42977420 ctattacagggaccaaaa 42977437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 10337127 - 10337346
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10337127 tgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttctaaaacaacccctgtaagttaataaccttttgcttttcatccctcccgtcaa 10337226  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||| | |||||| |||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  10337227 actctgttacaaagacgccttg-tggctaacggtgagtgacgtggcaggtgctgacttggccaaacacgtttatgtggaatgacagatgatccctgacta 10337325  T
Q  221 tattacagggaccaaaaccaa 241  Q
    ||||| |||||||||||||||    
T  10337326 tattatagggaccaaaaccaa 10337346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 42978956 - 42978736
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||| || |||||||||||||  ||||||||||||||||||||||||    
T  42978956 ttgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaatccttgtaagttaataattttttgcttttcgtccctcccgtca 42978857  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 219  Q
    ||||||||| |||||| ||||||||||| ||| ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||    
T  42978856 aactctgttacaaaaacgccttgctggctaacggtgagtgacttggcaggtgctgacttggtcaaacacgcttatgtggactgacagatgatccttgtct 42978757  T
Q  220 atattacagggaccaaaacca 240  Q
    |||||| ||||||||||||||    
T  42978756 atattatagggaccaaaacca 42978736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 54121864 - 54122068
Alignment:
Q  35 tttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaa 134  Q
    ||||| |||||||||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||    
T  54121864 ttttttgttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgcttttcgtccctcccgttaaactctgttacaaaa 54121963  T
Q  135 atgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggacca 234  Q
    | ||||||||| | ||| |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||    
T  54121964 acgccttgctgactaacggtgagtgacgtggcaggtgctgacttggccaaacacacttatgtggattgacagatgattcctgactatattacagggacca 54122063  T
Q  235 aaacc 239  Q
    |||||    
T  54122064 aaacc 54122068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 32082669 - 32082447
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  32082669 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaataacccctgtaagttaataactttttgcttttcgtccctcctgtcaa 32082570  T
Q  121 actctgttgcaaaaatgccttgctggcaaaca--gtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgac 218  Q
    |||||||| |||||| |||||| |||| ||||   ||||| | ||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32082569 actctgttacaaaaacgccttgttggctaacaacatgagtaatgtgacacgtgctgacttggctaaacacgcttatgtggactgacagatgatccctgac 32082470  T
Q  219 tatattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||||    
T  32082469 tatattacagggaccaaaaccaa 32082447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 10338206 - 10337984
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnn--gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtc 118  Q
    |||||||| |||||||||||||||| ||| |||||||         ||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10338206 tgtaattttgcgtgtttttggtttttgtctctgtatctttttttttgttttaaaacaacccctgtaagttaataactttttgcttttcgtccctcccgtc 10338107  T
Q  119 aaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgac 218  Q
    |||||||||| |||||| |||||||| || ||| |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10338106 aaactctgttacaaaaacgccttgctagctaacggtgagttacatggcaggtgctgacttggccaaacacgcttatgtgaactgacagatgatccctgac 10338007  T
Q  219 tatattacagggaccaaaaccaa 241  Q
    ||||||||||||| |||||||||    
T  10338006 tatattacagggatcaaaaccaa 10337984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 48711880 - 48712098
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||| |||||||||| |||||||||| ||||||       ||||||||| |||||||| ||||| ||||| ||||| ||||||||| ||||||||    
T  48711880 ttgtaattttgcgtgttttttgttttcgtccttgtatctttttttgttctaaaataacccctgcaagttgataacattttgattttcgtccttcccgtca 48711979  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 219  Q
    ||||| ||| |||||| |||||| |||| |||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48711980 aactcggttacaaaaacgccttgttggctaacagtgagtgacgtggcaagtgctgacttgaccaaacacgcttatgtggactgacagatgatccctgact 48712079  T
Q  220 atattacagggaccaaaac 238  Q
    |||||||||||||||||||    
T  48712080 atattacagggaccaaaac 48712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 69 - 241
Target Start/End: Original strand, 16879229 - 16879401
Alignment:
Q  69 taaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcag 168  Q
    |||||| |||| |||||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||| | | |||||||||| |    
T  16879229 taaaaccacccttgtaaggtaataaccttttgcttttcgtccctcccgtcaaaatctgttacaaaaacgccttgctggctaacggcgtgtgacgtggcgg 16879328  T
Q  169 atgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
     ||||| |||||  |||||||||| |||||||    ||||  ||||| ||||||||| |||||||||||||||    
T  16879329 gtgctggcttggttaaacacgcttttgtggacctgtagattttcccttactatattatagggaccaaaaccaa 16879401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 19994521 - 19994620
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  19994521 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 19994620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 55948990 - 55948890
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||    
T  55948990 ttgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataacttttggattttcttccctcccgtca 55948891  T
Q  120 a 120  Q
    |    
T  55948890 a 55948890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 19996090 - 19995991
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  19996090 tgtaatttggcgtgtttttggttttggtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccatcaa 19995991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 44251628 - 44251727
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||       ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  44251628 tgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttctaaaacaacccttgtaagttaataactttttgattttcgtccctcccgtcaa 44251727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 44253226 - 44253129
Alignment:
Q  23 taatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||       ||||||||||||||||| |||||||||||| ||||| |||||||| ||||||||||    
T  44253226 taatttggcgtgtttttggttttcgtccctatatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtctctcccgtcaa 44253129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 18597655 - 18597754
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||| |||||||||||||||||||||||||||        ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||    
T  18597655 tgtaatttgccgtgtttttggttttcgtccctgtatctttttttattctaaaacaacctccgtaagttaataactttttgattttcgtccctcccgtcaa 18597754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 55947383 - 55947482
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||| ||| |||||||||||||||||||||||       ||| ||||||| ||||| |||||||||||| ||||| |||||||||||||||||||    
T  55947383 tgtaatttgacgtatttttggttttcgtccctgtatctttttttgttataaaacagcccctataagttaataactttttgattttcgtccctcccgtcaa 55947482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 16880470 - 16880399
Alignment:
Q  76 acccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggc 147  Q
    |||| |||||||||||||| |||||||| |||||||||||||||||||||||| |||||| |||||| ||||    
T  16880470 acccttgtaagttaataactttttgcttatcgtccctcccgtcaaactctgttacaaaaacgccttggtggc 16880399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 53355167 - 53355222
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  53355167 gttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 53355222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 18597890 - 18597855
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtat 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  18597890 tgtaatttggcgtgtttttggttttcgtccctgtat 18597855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 22307706 - 22307808
Alignment:
Q  33 tgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaa 132  Q
    ||||||||||||| |||||||||||       ||||||||||||||| |||||||||  | | ||||| |||| |||||| |||||| | |||||| |||    
T  22307706 tgtttttggttttagtccctgtatcgttttttgttctaaaacaacccttgtaagttataagcattttggttttagtccctgccgtcataatctgttacaa 22307805  T
Q  133 aaa 135  Q
    |||    
T  22307806 aaa 22307808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 42226679 - 42226630
Alignment:
Q  96 ttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctg 145  Q
    ||||||||||||||||||||||||| |||| || |||||| |||||||||    
T  42226679 ttttgcttttcgtccctcccgtcaatctctattacaaaaacgccttgctg 42226630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 42978664 - 42978627
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42978664 cagaagatccctgactatattacagggaccaaaaccaa 42978627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 54122141 - 54122178
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  54122141 cagaagatccctgactatattacagggaccaaaaccaa 54122178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 54123298 - 54123261
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  54123298 cagaagatccctgactatattacagggaccaaaaccaa 54123261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 21354803 - 21354723
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtcc 110  Q
    ||||||||||| ||||||||||||||||       |||||||||||| |||||||||||  |||| ||||| |||| ||||    
T  21354803 gcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgttaactttttggttttagtcc 21354723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 24919075 - 24919143
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagtta 89  Q
    ||||| || ||||||||||||| ||||| ||||||||       |||||||||||||||||||||||||    
T  24919075 tgtaagtttgcgtgtttttggtcttcgttcctgtatctttttttgttctaaaacaacccctgtaagtta 24919143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 39654665 - 39654614
Alignment:
Q  66 ttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgt 117  Q
    ||||||||||| || ||||||||  |||||||||| ||||||||||||||||    
T  39654665 ttctaaaacaaaccatgtaagttgttaaccttttggttttcgtccctcccgt 39654614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 42889836 - 42889733
Alignment:
Q  31 cgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgc 130  Q
    ||||||||| |||||||||| ||||||       |||||||||||  || |||||||||  ||| |||||||||| |||||| ||||| ||||||||| |    
T  42889836 cgtgttttttgttttcgtccttgtatctttttttgttctaaaacagaccatgtaagttataaacattttgcttttggtccctgccgtc-aactctgttac 42889738  T
Q  131 aaaaa 135  Q
    |||||    
T  42889737 aaaaa 42889733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 10337921 - 10337887
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaac 238  Q
    |||| ||||||||||||||||||||||||||||||    
T  10337921 cagaagatccctgactatattacagggaccaaaac 10337887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 33609228 - 33609158
Alignment:
Q  171 gctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||||| |||| ||||||||||||||| |||||||||| ||   |||||| |||  |||||||||||||||    
T  33609228 gctgacatggcaaaacacgcttatgtgtactgacagatcataagtgactagatttgagggaccaaaaccaa 33609158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 16879471 - 16879508
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  16879471 cagatggtccctgactatattacagagaccaaaaccaa 16879508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 32082379 - 32082347
Alignment:
Q  209 gatccctgactatattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||||||| ||||||    
T  32082379 gatccctgactatattacagggaccagaaccaa 32082347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 28563399 - 28563619
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||        |||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  28563399 tgtaatttggcgtgtttttggttttcgtccttgtatctttttttcttctaaaacaacccctataagttaataactttttgcttttcgtccctcccgtcaa 28563498  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28563499 actctgttacaaaaatgccttgcaggctaacagtgagtgacgtggcaggggctgacttggccaaacacgcttatgtggactgacagatgatccttgacta 28563598  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  28563599 tattacagggaccaaaaccaa 28563619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 45499328 - 45499548
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  45499328 tgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 45499427  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| ||||  ||| | ||| | || |||| ||||| | | |||  |||| ||| |||||||||||   ||||||||||||||||||||    
T  45499428 cttccgttacaaaaacgcctcactgtctaacggcgactgacatggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatccctgacta 45499527  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  45499528 tattacagggaccaaaaccaa 45499548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 40303316 - 40303536
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| |||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  40303316 tgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 40303415  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| ||||  ||| | ||| | || |||| ||||| | | |||  |||| ||| |||||||||||   ||||||||||||||||||||    
T  40303416 cttccgttacaaaaacgcctcactgtctaacggcgactgacatggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatccctgacta 40303515  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  40303516 tattacagggaccaaaaccaa 40303536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 1841788 - 1841692
Alignment:
Q  24 aatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  1841788 aatttggcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataacttttttattttcgtccctcccgtcaa 1841692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 13947771 - 13947869
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  13947771 tgtaatttggcgtgtttttggttttcgtcc-tgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 13947869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 14088960 - 14089058
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  14088960 tgtaatttggcgtgtttttggttttcgtcc-tgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 14089058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 1840180 - 1840279
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||| || | ||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  1840180 tgtaatttggcgtgtttttggtttttgttcttgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 1840279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 40304798 - 40304682
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  40304798 tgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 40304699  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  40304698 cttctgttaaaaaaatg 40304682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 45493068 - 45492952
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  45493068 tgtaaattcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 45492969  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  45492968 cttctgttaaaaaaatg 45492952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 45500810 - 45500694
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  45500810 tgtaaattcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 45500711  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  45500710 cttctgttaaaaaaatg 45500694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 38730107 - 38729984
Alignment:
Q  13 atcatcattgtaatttggcgtgtttttggtttt-cgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccc 111  Q
    |||||| |||||| || |||||||||||||||| ||||||||||||       |||||||||||| ||||||||||||  ||||||||| ||||||||||    
T  38730107 atcatccttgtaagttcgcgtgtttttggtttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttacaaaccttttgattttcgtccc 38730008  T
Q  112 tcccgtcaaactctgttgcaaaaa 135  Q
    | |||| |  ||||||| ||||||    
T  38730007 tgccgttagcctctgttacaaaaa 38729984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 44097342 - 44097167
Alignment:
Q  66 ttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtgg 165  Q
    ||||||||||| |||||||||||  |||||||||| |||| ||||||  ||| ||  |||||| |||||| || ||| |||||||| |      ||||||    
T  44097342 ttctaaaacaaaccctgtaagttgttaaccttttggttttagtccctaacgttaacttctgttacaaaaacgcgttgttggcaaacggaattacacgtgg 44097243  T
Q  166 cagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    ||   |||||| |||| ||||||||||||||| |||||||||||||   |||||| |||  | |||||||||||||    
T  44097242 caatcgctgacatggcaaaacacgcttatgtgtactgacagatgataagtgactagatttgaaggaccaaaaccaa 44097167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 16142248 - 16142347
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    |||||| || |||||||||||||||||||| ||||||        |||||||||||| ||||||||||||  ||| ||||| |||||| |||||||||||    
T  16142248 ttgtaagttcgcgtgtttttggttttcgtctctgtatttttttctgttctaaaacaaaccctgtaagttacaaacgttttgattttcggccctcccgtca 16142347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 38728220 - 38728314
Alignment:
Q  34 gtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgtt 128  Q
    ||||||||||||||||| ||||||       |||||||||||| ||||| ||||||  ||| ||||| |||||||||||||||||| | ||||||    
T  38728220 gtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgcaagttacaaacgttttgattttcgtccctcccgtcataatctgtt 38728314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 16143623 - 16143541
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccct 112  Q
    ||||||||||| ||||||||||||||||       |||||||||||| |||||||||||  |||| ||||| |||| ||||||    
T  16143623 gcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgttaactttttggttttagtccct 16143541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 22053147 - 22053238
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccct 112  Q
    |||||| || |||||||||| |||||||||||||||||       |||||||||||||||| ||||||||  ||| ||||| |||| ||||||    
T  22053147 ttgtaagttcgcgtgttttttgttttcgtccctgtatctttttttgttctaaaacaacccc-gtaagttataaacgttttggttttagtccct 22053238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 7317413 - 7317504
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccct 112  Q
    ||||| || ||||||||||||||||||||| ||||||       |||||||||||| |||| ||||||  |||| ||||| |||| ||||||    
T  7317413 tgtaagttcgcgtgtttttggttttcgtccttgtatctttttttgttctaaaacaaaccctataagttgttaactttttggttttggtccct 7317504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 15346896 - 15347001
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttg 129  Q
    ||||||||||||||||| ||| | ||||       ||||||||||||||| ||||| |||  ||| |||||||||| |||| | |||||| | ||||||     
T  15346896 gcgtgtttttggttttcatccatatatctttttttgttctaaaacaacccttgtaaattataaacgttttgcttttggtccttgccgtcataatctgtta 15346995  T
Q  130 caaaaa 135  Q
    ||||||    
T  15346996 caaaaa 15347001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 36619569 - 36619788
Alignment:
Q  23 taatttggcgtgtttttggttttcgtccctgtatcnnnnnnn-gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaa 121  Q
    |||||||||||||||||| ||||||||||||||||        ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||    
T  36619569 taatttggcgtgtttttgattttcgtccctgtatcttttttttgttctaaaacaacccctataagttaatagctttttgcttttcgtccctcccgtcaaa 36619668  T
Q  122 ctctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactat 221  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36619669 ctctgttacaaaaatgccttgctggctaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtggactgacagacgatccctgactat 36619768  T
Q  222 attacagggaccaaaaccaa 241  Q
    ||||||||||||||||||||    
T  36619769 attacagggaccaaaaccaa 36619788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 39103448 - 39103227
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||||||||||||||||||||| || |||||       ||||||||||||||| | |||||||||||| |||||| |||||||||||||||||    
T  39103448 ttgtaatttggcgtgtttttggttttcgttccagtatctttttttgttctaaaacaacccgtataagttaataactttttgcgtttcgtccctcccgtca 39103349  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 219  Q
    |||||| || |||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39103348 aactctattacaaaaacgccttgctggctaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 39103249  T
Q  220 atattacagggaccaaaaccaa 241  Q
    ||||||||||||||||||||||    
T  39103248 atattacagggaccaaaaccaa 39103227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 8872543 - 8872762
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||| ||||||||       ||||||||||||||||  |||||||||||| |||||||||||||||| ||||||||    
T  8872543 tgtaatttggcgtgtttttggttttcgttcctgtatctttttttgttctaaaacaacccccataagttaataactttttgcttttcgtccc-cccgtcaa 8872641  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||| ||||||||| | ||| |||||||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  8872642 actctgttacaaaaacgccttgctgactaacggtgagtgatgtggcaggtgctaacttggccaaacacgcttacgtggactgacagatgatccctgacta 8872741  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  8872742 tattacagggaccaaaaccaa 8872762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 8874310 - 8874094
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||| | ||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  8874310 tgtaatttgacctgtttttggttttcgtccctgtatatttttttgttctaaaacaacccctgtaagttaataactttttgctttttgtccctctcgtcaa 8874211  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||||| ||||||||| ||| |||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  8874210 actctgttacaaaaatgtcttgctggctaacggtgagtgacgtggcaggtgctgattttgccaaacacgcttatgtggactgatagatgatccctgacta 8874111  T
Q  221 tattacagggaccaaaa 237  Q
    |||||||||||||||||    
T  8874110 tattacagggaccaaaa 8874094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 39101738 - 39101958
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||| | |||||||||||||||  |||| ||       |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  39101738 tgtaatttggtgcgtttttggttttcgtttctgtgtctttttttgttctaaaacaacccctgtatgttaataactttttgcttttcgtccctcccgtcaa 39101837  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39101838 actctgttacaaaaacgccttgctggctaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtagactgacagatgatccctgacta 39101937  T
Q  221 tattacagggaccaaaaccaa 241  Q
    ||||||| |||| ||||||||    
T  39101938 tattacaaggactaaaaccaa 39101958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 36621262 - 36621050
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||| | || ||||||||||||||  |||||       ||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||    
T  36621262 tgtaatttggtgcgtctttggttttcgtccacgtatctttttttgttctaaaacaacccttgtacattaataactttttgcttttcgtccctcccgtcaa 36621163  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| |||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |||| ||    ||||||||||||    
T  36621162 actctgttacaaaaacgccttgctggctaacggtgagtgacgtggcaggtgctgacttggccaaacacgcttatgtagactaac----gatccctgacta 36621067  T
Q  221 tattacagggaccaaaa 237  Q
    |||||||||||||||||    
T  36621066 tattacagggaccaaaa 36621050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 38624739 - 38624959
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| |||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  38624739 tgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 38624838  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| |||| |||| | ||| | |  ||| |||||| | | |||  |||| ||| |||||||||||   |||||||||||| |||||||    
T  38624839 cttccgttacaaaaacgcctcgctgtctaacggcggctgatgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatctctgacta 38624938  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  38624939 tattacagggaccaaaaccaa 38624959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 5225589 - 5225428
Alignment:
Q  76 acccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctga 175  Q
    |||| |||||||||||||   ||||||||||| |||||  ||||||||||||| |||||| | |||| |  | |||  || ||||| |||| | ||||||    
T  5225589 acccatgtaagttaataagtctttgcttttcgcccctcttgtcaaactctgttacaaaaacgtcttgatatctaacgatgtgtgacatggcgggtgctga 5225490  T
Q  176 cttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaa 237  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||||||||    
T  5225489 cttggctaaacacgtttatgtggactgacagatgatccctgactaaattacaaggaccaaaa 5225428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 30334041 - 30333944
Alignment:
Q  23 taatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  30334041 taatttggcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 30333944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 241
Target Start/End: Complemental strand, 11772727 - 11772516
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttg 129  Q
    |||||||||||||||||||||| |||||       ||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||||  || |||     
T  11772727 gcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccttgtaagttaataactttttgattttcgtccctcctgtcaacttccgtta 11772628  T
Q  130 caaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagg 229  Q
    |||||   |||   || | |||   |  |||||||||| | | |||  |||| ||| |||||||||||   |||||||||||||||||||||||||||||    
T  11772627 caaaagcacctcattgtctaacgacggctgacgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatccctgactatattacagg 11772528  T
Q  230 gaccaaaaccaa 241  Q
    ||||||||||||    
T  11772527 gaccaaaaccaa 11772516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 5224886 - 5224970
Alignment:
Q  157 gtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    ||||||||| || |||| ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  5224886 gtgacgtgggaggtgctaacttggctaaacacgcttatgtggactaacagatgatccatgactatattacagggaccaaaaccaa 5224970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 1418972 - 1418873
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||| ||||||||| |||||||||||||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  1418972 tgtaatttgacgtgttttttgttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 1418873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 25916314 - 25916215
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||| |||||||||||       ||||||||||||||||| |||||||||||| ||||  |||||||||||||||||||    
T  25916314 tgtaatttggcgtgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttaattttcgtccctcccgtcaa 25916215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 30332306 - 30332405
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||| ||||| |||||||||||||||||       ||||||||||||||||| |||||||||||| ||||| ||||||||||||| |||||    
T  30332306 tgtaatttggcgtattttttgttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcctgtcaa 30332405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 17555040 - 17554921
Alignment:
Q  21 tgtaatttggcgtgtttttggtttt-cgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || |||||||||||||||| |||||||||||        |||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||    
T  17555040 tgtaagttcgcgtgtttttggtttttcgtccctgtattattttttgttctaaaacaacccctgcaagttaataactttttgattttcgtccctcccgtca 17554941  T
Q  120 aactctgttgcaaaaatgcc 139  Q
    |  || ||| ||||||||||    
T  17554940 acttccgttacaaaaatgcc 17554921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 137
Target Start/End: Complemental strand, 38626194 - 38626090
Alignment:
Q  33 tgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaa 132  Q
    |||||||||||||||||| ||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||  ||||||  ||    
T  38626194 tgtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaacttctgttaaaa 38626095  T
Q  133 aaatg 137  Q
    |||||    
T  38626094 aaatg 38626090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 12250437 - 12250567
Alignment:
Q  66 ttctaaaacaacccct-gtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtg 164  Q
    |||||||||||||||  || ||||||| || || ||||||| ||||||||| |||||||||  | ||||||   |||| |||| ||| | | ||||||||    
T  12250437 ttctaaaacaaccccccgtgagttaatgactttctgctttttgtccctcccatcaaactct--tacaaaaacatcttgatggctaacggcgtgtgacgtg 12250534  T
Q  165 gcagatgctgacttggccaaacacgcttatgtg 197  Q
    || | |||||||||| |||||||||||||||||    
T  12250535 gcgggtgctgacttgcccaaacacgcttatgtg 12250567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 25914514 - 25914612
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||| |||| ||||  ||||||       ||| ||||||||||||||| |||||||||| ||||  |||||||||||||||||||    
T  25914514 tgtaatttggcgtgttttttgtttccgtctttgtatctttttt-gttttaaaacaacccctgttagttaataacttttttattttcgtccctcccgtcaa 25914612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 1417477 - 1417533
Alignment:
Q  65 gttctaaaacaacccc-tgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||    
T  1417477 gttctaaaacaaccccctgtaagttaataacttttttattttcgtccctcccgtcaa 1417533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 27756812 - 27756723
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    |||||||||| |||||||||||||||||       |||||||||||| |||||||| |||  ||| |||||||||| |||||| ||||||    
T  27756812 gcgtgttttttgttttcgtccctgtatctttttttgttctaaaacaaaccctgtaaattataaacattttgcttttggtccctgccgtca 27756723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 36620983 - 36620946
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  36620983 cagaagatccctgactatattacagggaccaaaaccaa 36620946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 39102021 - 39102058
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39102021 cagaagatccctgactatattacagggaccaaaaccaa 39102058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 8874029 - 8873993
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaacca 240  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8874029 cagaagatccctgactatattacagggaccaaaacca 8873993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 28592239 - 28592290
Alignment:
Q  160 acgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgat 211  Q
    ||||||||  ||||||| |||| |||||||||||||||| ||||||||||||    
T  28592239 acgtggcaattgctgacatggcaaaacacgcttatgtggcctgacagatgat 28592290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 16308588 - 16308687
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatc-nnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || ||||||||||||||||||||||||||||        |||||||||||  ||||||||||||  | |||| ||||||| |||||| ||||||    
T  16308588 tgtaagttcgcgtgtttttggttttcgtccctgtatcttttttttgttctaaaacagaccctgtaagttataagccttgtgcttttggtccctaccgtca 16308687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 39103177 - 39103127
Alignment:
Q  191 ttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||||||| ||  |||| ||| |||||||||||||||||||||||||||||    
T  39103177 ttatgtggccttccagaagattcctgactatattacagggaccaaaaccaa 39103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 5225040 - 5225077
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  5225040 cagatgatccctaactatattatagggaccaaaaccaa 5225077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 8872825 - 8872858
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaa 237  Q
    |||| |||||||||||||||||||||||||||||    
T  8872825 cagaagatccctgactatattacagggaccaaaa 8872858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 12251375 - 12251299
Alignment:
Q  66 ttctaaaacaacccctgtaagttaa-taaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgcctt 141  Q
    |||||||||| |||||||||||||| ||   |||||||||| |||||||| | ||||||  ||| ||||||||||||    
T  12251375 ttctaaaacagcccctgtaagttaaatatttttttgcttttggtccctcctgccaaacttcgttacaaaaatgcctt 12251299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 36619851 - 36619879
Alignment:
Q  213 cctgactatattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||||||||||    
T  36619851 cctgactatattacagggaccaaaaccaa 36619879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 41668296 - 41668516
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||||||| ||||||        |||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  41668296 tgtaatttggcgtgtttttggttttcgtctctgtatatttttttgttctaaaacaacctctgtaagttaataactttttgcttttcgtctctcccgtcaa 41668395  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| ||||||  |||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41668396 actctgttacaaaaacaccttgctggctaacggtgagtgatgtggcaggtgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 41668495  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  41668496 tattacagggaccaaaaccaa 41668516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 19251154 - 19250982
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtg 164  Q
    ||||||||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||| |||||| | ||||||||| ||||| |  |||||||    
T  19251154 gttctaaaacaacccctgtaaattaataattttttgcttttcgtccctccagtcaaactctgttacaaaaacgtcttgctggctaacagcgtatgacgtg 19251055  T
Q  165 gcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaa 237  Q
    |||| |||||||||||  || ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19251054 gcaggtgctgacttggttaatcacgcttatatggactgacagatgatccctgactatattacagggaccaaaa 19250982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 19249343 - 19249555
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||  |||||||||||||||||  ||||||       |||||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||    
T  19249343 tgtaatttggattgtttttggttttcgtctttgtatctttttttgttctaaaacaaccccggtaagttaataac-ttttgcttttcgtcccttccgtaaa 19249441  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
    |||||||| | ||||  ||||| |||| ||  | | ||||||| || | |||||||||||| || || |||| |||||| ||||| ||||||||||||||    
T  19249442 actctgttac-aaaacaccttgatggctaatggcgtgtgacgtcgcgggtgctgacttggctaagcatgcttgtgtggaatgacatatgatccctgacta 19249540  T
Q  221 tattacagggaccaa 235  Q
    ||||||| |||||||    
T  19249541 tattacaaggaccaa 19249555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 7655300 - 7655201
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  7655300 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 7655201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 28920691 - 28920592
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||| ||||| |||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28920691 tgtaatttggcgtgttttttgtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataaccttttgattttcgtccctcccgtcaa 28920592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 16673292 - 16673193
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||| ||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  16673292 tgtaattttgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 16673193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 33259408 - 33259291
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |||||||||||| ||||  |||||||||||||||||||    
T  33259408 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaacccctataagttaataactttttaattttcgtccctcccgtcaa 33259309  T
Q  121 actctgttgcaaaaatgc 138  Q
      || ||| |||||||||    
T  33259308 cttccgttacaaaaatgc 33259291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 33279567 - 33279450
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |||||||||||| ||||  |||||||||||||||||||    
T  33279567 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaacccctataagttaataactttttaattttcgtccctcccgtcaa 33279468  T
Q  121 actctgttgcaaaaatgc 138  Q
      || ||| |||||||||    
T  33279467 cttccgttacaaaaatgc 33279450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 36145367 - 36145466
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||| ||||| |||||||||||||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  36145367 tgtaatttggcgtattttttgttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 36145466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 28919106 - 28919205
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||| ||||| ||||||||||       ||||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||    
T  28919106 tgtaatttggcgtgtttttgattttcatccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtcccttccgtcaa 28919205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 33257904 - 33258002
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||| |||| ||||||       ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  33257904 tgtaatttggcgtgtttttggtttttgtccttgtatctttttttgttctaaaacaaccc-tgtaagttaataactttttgattttcgtccctcccgtcaa 33258002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 33278076 - 33278174
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||| |||| ||||||       ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  33278076 tgtaatttggcgtgtttttggtttttgtccttgtatctttttttgttctaaaacaaccc-tgtaagttaataactttttgattttcgtccctcccgtcaa 33278174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 7653709 - 7653808
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||| ||||| |||||||||||||||||       ||||||||||| ||||| |||||||||||| ||||| |||| ||||||||||||||    
T  7653709 tgtaatttggcgtattttttgttttcgtccctgtatctttttttgttctaaaacagcccctataagttaataactttttgatttttgtccctcccgtcaa 7653808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 36146947 - 36146849
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||| |||||||||||||||||||| ||||||       |||||||||||| || |||||||||||||| ||||| |||||||||||||||||||    
T  36146947 tgtaatttgacgtgtttttggttttcgtcc-tgtatctttttttgttctaaaacaatccatgtaagttaataactttttgattttcgtccctcccgtcaa 36146849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 19057903 - 19057789
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||| |||||||| | ||||||       ||||||||||||||||| |||||||||||| ||||  ||||||||||| |||||||    
T  19057903 tgtaatttggcgtgtttttagttttcgttcatgtatctttttttgttctaaaacaacccctataagttaataacttttttattttcgtcccttccgtcaa 19057804  T
Q  121 actctgttgcaaaaa 135  Q
      |||||| ||||||    
T  19057803 cttctgttacaaaaa 19057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 50317086 - 50316988
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || ||||||||||| ||||||||||||||||       |||||||||||| ||||||||||||  ||| ||||| ||||||||||||||||||    
T  50317086 tgtaagttcgcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttacaaacgttttgattttcgtccctcccgtca 50316988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 222
Target Start/End: Complemental strand, 10611792 - 10611651
Alignment:
Q  87 ttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaaca----gtga-gtga-cgtggcagatgctgacttgg 180  Q
    |||||||  |||||||||| ||||||||||| |||||||||| ||||||  |||||||||| |||     |||| |||  |||||||| ||||||||| |    
T  10611792 ttaataattttttgctttttgtccctcccgttaaactctgttacaaaaactccttgctggctaacgacatgtgacgtgggcgtggcaggtgctgacttag 10611693  T
Q  181 ccaaacacgcttatgtggactgacagatgatccctgactata 222  Q
    | |||||| ||||| ||||||| |||||||||||||||||||    
T  10611692 ctaaacacacttatatggactggcagatgatccctgactata 10611651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 16672722 - 16672777
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||| |||||||||||| ||||| ||| |||||||||||||||    
T  16672722 gttctaaaacaacccctataagttaataactttttgatttccgtccctcccgtcaa 16672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 22684187 - 22684087
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    |||||| || ||||||||||||||||||||| ||||||       |||||||||||| |||||||| || ||||| |||||  |||||||||| ||||||    
T  22684187 ttgtaagttcgcgtgtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgtaaattgataactttttgaatttcgtccctaccgtca 22684088  T
Q  120 a 120  Q
    |    
T  22684087 a 22684087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 24438984 - 24438885
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnn-gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || ||||||||||||||||||||||||||||        |||||||||||| ||||||||||||  ||| ||||| |||||||||| |||||||    
T  24438984 tgtaaattcgcgtgtttttggttttcgtccctgtatcttttttttgttctaaaacaaaccctgtaagttacaaacgttttgattttcgtcccacccgtca 24438885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 16592044 - 16592080
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatc 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  16592044 tgtaatttggcgtgtttttggttttcgtccctgtatc 16592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 19250794 - 19250762
Alignment:
Q  209 gatccctgactatattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||||||||||||||    
T  19250794 gatccctgactatattacagggaccaaaaccaa 19250762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 13211137 - 13211050
Alignment:
Q  32 gtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||||||||||||||||||       |||||||||||  ||||||||||||  ||  ||||||||||  ||||| ||||||    
T  13211137 gtgtttttggttttcgtccctgtatctctttttgttctaaaacagaccctgtaagttataaatgttttgcttttattccctgccgtca 13211050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 41668579 - 41668616
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  41668579 cagaagatccctgactatattacagtgaccaaaaccaa 41668616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 41925305 - 41925346
Alignment:
Q  184 aacacgcttatgtggactgacagatgatccctgactatatta 225  Q
    ||||| |||||||| ||||||||||||||||| |||||||||    
T  41925305 aacactcttatgtgaactgacagatgatccctaactatatta 41925346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 31321032 - 31321068
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatc 57  Q
    ||||| || ||||||||||||||||||||||||||||    
T  31321032 tgtaagttcgcgtgtttttggttttcgtccctgtatc 31321068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 21 - 203
Target Start/End: Original strand, 31656976 - 31657159
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnn-gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||||||||| |||||||||||||||||| |||||         |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  31656976 tgtaatttggcatgtttttggttttcgtccttgtattttttttttgttctaaaacaatccctgtaagttaataactttttgcttttcgtccctcccgtca 31657075  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactga 203  Q
    ||||||||| |||||| ||||||||||| ||||||||||||| |||||| ||||||||||| |||||| |||||||||||||||    
T  31657076 aactctgttacaaaaacgccttgctggctaacagtgagtgacttggcaggtgctgacttggtcaaacatgcttatgtggactga 31657159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 40499288 - 40499068
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| |||||       |||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  40499288 tgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaaccccggtaagttaataactttttgattttcgtccctcccgtcaa 40499189  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| |||| |||| | ||| | |  |||||||||| | | |||  |||| ||| |||||||||||   ||||||||||||||||||||    
T  40499188 cttccgttacaaaaacgcctcgctgtctaacggcggctgacgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatccctgacta 40499089  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  40499088 tattacagggaccaaaaccaa 40499068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 31796870 - 31796650
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  31796870 tgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 31796771  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| ||||  ||| | ||| | || |||| ||||| | | |||  |||| ||| ||||| |||||   ||||||||||||||||||||    
T  31796770 cttccgttacaaaaacgcctcactgtctaacggcgactgacatggcaaaggatgatgtggcaaaaaacgctgatgtgtcgtgacagatgatccctgacta 31796671  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  31796670 tattacagggaccaaaaccaa 31796650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 41083307 - 41083087
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnn-gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || |||||||||||||||||||||| |||||        |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  41083307 tgtaagtttgcgtgtttttggttttcgtccccgtatcttttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtca 41083208  T
Q  120 aactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgact 219  Q
    |  || ||| |||||| ||||  ||| |  || | || |||| ||||| | | |||  |||| ||| |||||||||||   |||||||||||||||||||    
T  41083207 acttccgttacaaaaacgcctcactgtc-tacggcgactgacatggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatccctgact 41083109  T
Q  220 atattacagggaccaaaaccaa 241  Q
    ||||||||||||||||||||||    
T  41083108 atattacagggaccaaaaccaa 41083087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 48568566 - 48568346
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| ||||        |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  48568566 tgtaagttcgcgtgtttttggttttcgtccccgtatttttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 48568467  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| ||||  ||| | |||   |  || ||||||| | | |||  |||| ||| |  ||||||||   ||||||||||||||||||||    
T  48568466 cttccgttacaaaaacgcctccctgtctaacgacggatgtcgtggcaaaggatgatgtggcaaaaaattcttatgtgtcgtgacagatgatccctgacta 48568367  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  48568366 tattacagggaccaaaaccaa 48568346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 53527995 - 53528092
Alignment:
Q  23 taatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  53527995 taatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaactcctgtaagttaataactttttgattttcgtccctcccgtcaa 53528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 33732988 - 33733087
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||| |||||||        ||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||    
T  33732988 tgtaatttggcgtgtttttggttttcgttcctgtatttttttttgttctaaaacaacccctataagttaataactttttgattttcgtccttcccgtcaa 33733087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 33734538 - 33734439
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||| |||||||||||||||| || ||||||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  33734538 tgtaatttagcgtgtttttggttttggttcctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccatcaa 33734439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 138
Target Start/End: Complemental strand, 53529570 - 53529453
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||| ||||| |||||||||||||||||       ||||||||| | ||||| |||||||||||| ||||| |||||||||||||||||||    
T  53529570 tgtaatttggcgtatttttagttttcgtccctgtatctttttttgttctaaaatagcccctataagttaataactttttgattttcgtccctcccgtcaa 53529471  T
Q  121 actctgttgcaaaaatgc 138  Q
      || ||| |||||||||    
T  53529470 cttccgttacaaaaatgc 53529453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 41081825 - 41081941
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  41081825 tgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 41081924  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  41081925 cttctgttaaaaaaatg 41081941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 31795396 - 31795512
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||| |||||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  31795396 tgtaagttcgcgtgtttttggttttcggccctgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 31795495  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  31795496 cttctgttaaaaaaatg 31795512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 48567019 - 48567135
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||| |||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  48567019 tgtaagtttgcgtgtttttggttttcgtcactgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 48567118  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  48567119 cttctgttaaaaaaatg 48567135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 30700328 - 30700436
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttg 129  Q
    ||||||||||||||||||||| ||||||       |||||||||||  ||||||||||||  ||| |||||||||| |||||| ||||||   ||||||     
T  30700328 gcgtgtttttggttttcgtccttgtatctttttttgttctaaaacacaccctgtaagttataaacattttgcttttggtccctgccgtcagcatctgtta 30700427  T
Q  130 caaaaatgc 138  Q
    |||||||||    
T  30700428 caaaaatgc 30700436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 31657236 - 31657273
Alignment:
Q  204 cagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||||||||||||||||||||||||||||||||    
T  31657236 cagaagatccctgactatattacagggaccaaaaccaa 31657273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 41881537 - 41881469
Alignment:
Q  173 tgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||| ||||||||||||||| |||||||||||||   |||||| |||  |||||||||||||||    
T  41881537 tgacatggcaaaacacgcttatgtgtactgacagatgataagtgactagatttgagggaccaaaaccaa 41881469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 41879958 - 41880036
Alignment:
Q  32 gtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtcc 110  Q
    |||||||||||||||||| |||||||       |||||||||||| || |||||||||  ||| ||||| |||||||||    
T  41879958 gtgtttttggttttcgtctctgtatctttttttgttctaaaacaaaccttgtaagttataaacgttttgattttcgtcc 41880036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 66 - 225
Target Start/End: Complemental strand, 30792821 - 30792662
Alignment:
Q  66 ttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtgg 165  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||||||| || |||   | ||||||||     
T  30792821 ttctaaaacaacccctgtaagttaataactttttgcttttcgtccctcccgtcaaactttgttacaaaaacgccttgctagctaacgacgtgtgacgtga 30792722  T
Q  166 cagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatatta 225  Q
    ||| |||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||    
T  30792721 caggtgctgacttggctaaacacgtttatgtggactgagagatgatccatgactatatta 30792662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 46245145 - 46245365
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||||||||| |||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  46245145 tgtaagttcgcgtgtttttggttttcgtccccgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 46245244  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaaacacgcttatgtggactgacagatgatccctgacta 220  Q
      || ||| |||||| |||| |||| | ||| | |  |||||||||| | | |||  |||| ||| |||||||||||   ||||||||||||||||||||    
T  46245245 cttccgttacaaaaacgcctcgctgtctaacggcggctgacgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcgtgacagatgatccctgacta 46245344  T
Q  221 tattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||||    
T  46245345 tattacagggaccaaaaccaa 46245365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 9532603 - 9532456
Alignment:
Q  68 ctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggca 167  Q
    ||||||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||| |||||| | ||||||||| ||| ||| |||| | ||      
T  9532603 ctaaaacaaccccagtaaattaataactttttgcttttcgtccctcccatcaaactctgttacaaaaacgtcttgctggctaacggtgtgtgatgcggtg 9532504  T
Q  168 gatgctgacttggccaaacacgcttatgtggactgacagatgatccct 215  Q
    |||||||||||||  ||||||| ||||||||| |||||||||||||||    
T  9532503 gatgctgacttggataaacacgtttatgtggattgacagatgatccct 9532456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 21716655 - 21716556
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  21716655 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaatccctgtaagttaataactttttgattttcgtccctcccgtcaa 21716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 40028480 - 40028579
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||| ||||  |||||||||||||||||||    
T  40028480 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataacttttttattttcgtccctcccgtcaa 40028579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 45276432 - 45276531
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||| |||||||||||| |||||||||||       |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  45276432 tgtaatttggcgagtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtccctcccgtcaa 45276531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 45278003 - 45277904
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||    
T  45278003 tgtaatttggcgtgtttttggttttcgtccctgtatctttttttgttttaaaacaacccctataagttaataactttttgattttcgtccctcccgtcaa 45277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 8231670 - 8231571
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||| ||||||||||||| |||||||||||       |||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  8231670 tgtaatttggcttgtttttggtttttgtccctgtatctttttttgttctaaaacaacccctgtaagttaataactttttgattttcgtcactcccgtcaa 8231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 31392081 - 31392176
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccg 116  Q
    ||||||||| |||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  31392081 tgtaatttgacgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataactttttgattttcgtccctcccg 31392176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 31393695 - 31393596
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||       ||| |||||||||||||||||||||||||| ||||  |||||||||||||||||||    
T  31393695 tgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttataaaacaacccctgtaagttaataactttttaattttcgtccctcccgtcaa 31393596  T

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Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 8230093 - 8230192
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||| ||||||||||||||||||||||||||       ||||||||||||||||| |||||||||||| ||||  |||||||||||| ||||||    
T  8230093 tgtaatttggtgtgtttttggttttcgtccctgtatctttttttgttctaaaacaacccctataagttaataacttttttattttcgtccctctcgtcaa 8230192  T

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Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 21715095 - 21715194
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||| ||||||||||||||||       ||| |||||||| |||| |||||||||||| ||||| |||||||||||||||||||    
T  21715095 tgtaatttggcgtgtttttgattttcgtccctgtatctttttttgttttaaaacaatccctataagttaataactttttgattttcgtccctcccgtcaa 21715194  T

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Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 4675832 - 4675734
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||| ||||||||| ||||||       |||||||||||||| || |||||||||||| ||||| |||||||||||||||||||    
T  4675832 tgtaatttggcgtgtttttgattttcgtccatgtatctttttt-gttctaaaacaaccactataagttaataactttttgattttcgtccctcccgtcaa 4675734  T

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Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 12180675 - 12180577
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||| ||||||||||||  ||| ||||| ||||||||||||||||||    
T  12180675 tgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttacaaacgttttgattttcgtccctcccgtca 12180577  T

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Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 46246611 - 46246495
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||| ||||||||||| ||||| |||||  |||||||||| |||||||    
T  46246611 tgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagttgataactttttgaatttcgtccctaccgtcaa 46246512  T
Q  121 actctgttgcaaaaatg 137  Q
      ||||||  |||||||    
T  46246511 cttctgttaaaaaaatg 46246495  T

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Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 40030065 - 40029966
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||| |||||| |||||||||        |||||||||||||| || ||||||| |||| ||||| |||||||||||||||||||    
T  40030065 tgtaatttggcgtgttttttgttttcatccctgtatatttttttgttctaaaacaacctctataagttagtaactttttgattttcgtccctcccgtcaa 40029966  T

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Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 14774579 - 14774634
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  14774579 gttctaaaacaacccctgcaagttaataactttttgattttcgtccctcccgtcaa 14774634  T

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Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 15225032 - 15225087
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  15225032 gttctaaaacaacccctgcaagttaataactttttgattttcgtccctcccgtcaa 15225087  T

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Target: chr7; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 21914674 - 21914510
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||| ||||||||||||||||||||| ||||        || ||||||||| ||| |||||||||||| |||  ||||| |||||||  |||||    
T  21914674 tgtaatttggtgtgtttttggttttcgtccctatatctttt----ttataaaacaacacctataagttaataactttt--ctttttgtccctcatgtcaa 21914581  T
Q  121 actctgttgcaaaaatgccttgctggcaaacagtga-gtgacgtggcagatgctgacttggccaaacacgct 191  Q
    |||||||| |||||| ||||||| ||| ||| | || |||||||||| | |||||||||| | |||||||||    
T  21914580 actctgttacaaaaacgccttgcaggctaac-gagatgtgacgtggcgggtgctgacttgactaaacacgct 21914510  T

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Target: chr7; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 15135446 - 15135500
Alignment:
Q  66 ttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    
T  15135446 ttctaaaacaacccctgcaagttaataactttttgattttcgtccctcccgtcaa 15135500  T

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Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 32881183 - 32881238
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||    
T  32881183 gttctaaaacaacccctataagttaataactttttgattttcgtccctcccatcaa 32881238  T

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Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 13420322 - 13420224
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || |||||||||||||||| |||||||||||       |||||||||||||||||||||||||  | | ||||| |||| |||||| ||||||    
T  13420322 tgtaagtttgcgtgtttttggttttagtccctgtatctttttttgttctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtca 13420224  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 37132019 - 37132075
Alignment:
Q  182 caaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaac 238  Q
    |||| |||||||||||   ||||||||||||||| ||||||||||||||||||||||    
T  37132019 caaaaacgcttatgtgtcgtgacagatgatccctaactatattacagggaccaaaac 37132075  T

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Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 11671313 - 11671205
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttg 129  Q
    |||||||||| |||||||||| ||||||       |||||||||||| ||||||||||||  ||  ||||| |||||||||||| |||||   ||||||     
T  11671313 gcgtgttttttgttttcgtccatgtatctatttttgttctaaaacaaaccctgtaagttacaaatgttttgattttcgtccctctcgtcagcatctgtta 11671214  T
Q  130 caaaaatgc 138  Q
    |||||||||    
T  11671213 caaaaatgc 11671205  T

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Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 21914398 - 21914457
Alignment:
Q  67 tctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctg 126  Q
    |||||||||||  | ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  21914398 tctaaaacaacttcggtaagttaataactttttgtttttcgttcctcccgtcaaactctg 21914457  T

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Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 11747582 - 11747631
Alignment:
Q  188 cgcttatgtggactgacagatgatccctgactatattacagggaccaaaa 237  Q
    ||||||||||   ||||||||||||||| |||||||||||||||||||||    
T  11747582 cgcttatgtgtcgtgacagatgatccctaactatattacagggaccaaaa 11747631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 12178515 - 12178597
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccct 112  Q
    ||||||||||||||||||||||||||||       |||||||||||| | |||||||||  |||| ||||| |||| ||||||    
T  12178515 gcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaactctgtaagttgttaactttttggttttagtccct 12178597  T

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Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 37133676 - 37133586
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||| |||||||       |||||||||||||||| | ||||||  ||| ||||| ||||||| |||||| ||||    
T  37133676 gcgtgtttttggttttcgtcactgtatctttttttgttctaaaacaacccccggaagttataaacgttttggttttcgttcctcccttcaa 37133586  T

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Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 11670016 - 11670084
Alignment:
Q  173 tgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||| |||| ||||||||||||||| |||||||||||||   |||||| |||  |||||||||||||||    
T  11670016 tgacatggcaaaacacgcttatgtgtactgacagatgataagtgactagatttgagggaccaaaaccaa 11670084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 225
Target Start/End: Original strand, 30791335 - 30791475
Alignment:
Q  86 gttaataacctt-ttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttggccaa 184  Q
    ||||||||| || ||| ||||||||| | ||||||||| | ||| ||||||  ||||| |||| | | | | ||||  |||| | |||||| ||||| ||    
T  30791335 gttaataactttattgtttttcgtcctttccgtcaaacaccgttacaaaaacaccttgttggctagcggcgtgtgatatggcgggtgctgatttggctaa 30791434  T
Q  185 acacgcttatgtggactgacagatgatccctgactatatta 225  Q
    ||||| |||||||||||||  |||||||||| |||||||||    
T  30791435 acacgtttatgtggactgattgatgatccctaactatatta 30791475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 32882707 - 32882652
Alignment:
Q  65 gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||| | ||||||||| || ||||| ||||||||||| |||||||    
T  32882707 gttctaaaacaacccttataagttaatgactttttgattttcgtcccttccgtcaa 32882652  T

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Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 15136975 - 15136877
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || ||||||||||| ||||||||| || |||       ||||||||||||||| || ||||||||||| ||||| ||||| |||| ||||||||    
T  15136975 tgtaaattcgcgtgtttttgattttcgtccttgaatctttttttgttctaaaacaacccttgcaagttaataactttttgattttcatccc-cccgtcaa 15136877  T

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Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 37131867 - 37131957
Alignment:
Q  30 gcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||| |||||||||||| ||||||||       ||||||||| ||| | |||||||||  ||| ||||| ||||||||||| |||||||    
T  37131867 gcgtgtgtttggttttcgttcctgtatctttttttgttctaaaataactcatgtaagttataaacgttttggttttcgtcccttccgtcaa 37131957  T

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Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 30791563 - 30791599
Alignment:
Q  205 agatgatccctgactatattacagggaccaaaaccaa 241  Q
    |||||||| |||||||||||||||| |||||||||||    
T  30791563 agatgatcactgactatattacaggcaccaaaaccaa 30791599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 31734603 - 31734571
Alignment:
Q  209 gatccctgactatattacagggaccaaaaccaa 241  Q
    |||||||||||||||||||| ||||||||||||    
T  31734603 gatccctgactatattacagagaccaaaaccaa 31734571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 6930 - 6826
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||||||| ||||||        |||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||    
T  6930 tgtaatttggcgtgtttttggttttcgtctctgtatatttttttgttctaaaacaacctctgtaagttaataactttttgcttttcgtctctcccgtcaa 6831  T
Q  121 actct 125  Q
    |||||    
T  6830 actct 6826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 25264363 - 25264462
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    |||||||||||||||||||||||||||||| ||||||       ||| |||||||| |||||||| |||||||| ||||| |||||||||||||||||||    
T  25264363 tgtaatttggcgtgtttttggttttcgtccttgtatctttttttgttttaaaacaatccctgtaaattaataactttttgattttcgtccctcccgtcaa 25264462  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 25265941 - 25265842
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||| |||||||||||||||||       ||| |||||||| |||| |||||||||||| ||||| |||||||||||||||||||    
T  25265941 tgtaatttggcgtgttttttgttttcgtccctgtatctttttttgttttaaaacaatccctataagttaataactttttgattttcgtccctcccgtcaa 25265842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 241
Target Start/End: Original strand, 31917062 - 31917222
Alignment:
Q  81 tgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggcagatgctgacttgg 180  Q
    |||||||||||||| ||||||||||||||| | |||||||||||  || ||||||   |||| |||  ||||||| ||| |||||| | |||||  ||||    
T  31917062 tgtaagttaataactttttgcttttcgtccataccgtcaaactcaattacaaaaacatcttgttggataacagtgtgtgccgtggcgggtgctggtttgg 31917161  T
Q  181 ccaaacacgcttatgtggactgacagatgatccctgactatattacagggaccaaaaccaa 241  Q
    | ||||||| || ||||   ||||| ||||||||| ||||||||||||| |||||||||||    
T  31917162 ctaaacacgtttgtgtgttgtgacatatgatccctaactatattacaggaaccaaaaccaa 31917222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 33295481 - 33295383
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||| ||||| |||||||||||       ||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||    
T  33295481 tgtaatttggcgtgttttttgtttttgtccctgtatctttttt-gttctaaaacaacccttgtaagttaataactttttgatttccgtccctcccgtcaa 33295383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 33293961 - 33294062
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnn-gttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtc 118  Q
    |||||||||| || ||||||||||||||||| ||||||        ||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||    
T  33293961 ttgtaatttgacgcgtttttggttttcgtccttgtatcttttttttgttctaaaacaacccctataaattaataactttttgattttcgtccctcccgtc 33294060  T
Q  119 aa 120  Q
    ||    
T  33294061 aa 33294062  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 3158073 - 3157975
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtca 119  Q
    ||||| || ||||||||||||||||||||||||||||       |||||||||||  ||||||||||||  ||| |||||||||  |||||| ||||||    
T  3158073 tgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacagaccctgtaagttataaacattttgctttcggtccctgccgtca 3157975  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 39886112 - 39885998
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||| |||||||||||        ||||||||||||||||||||||||  | | ||||| |||| |||||| ||||||     
T  39886112 tgtaagttcgcgtgtttttggttttagtccctgtatctttttttattctaaaacaacccctgtaagttataagcattttggttttagtccctgccgtcat 39886013  T
Q  121 actctgttgcaaaaa 135  Q
    | |||||| ||||||    
T  39886012 aatctgttacaaaaa 39885998  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 41912540 - 41912705
Alignment:
Q  67 tctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaaactctgttgcaaaaatgccttgctggcaaacagtgagtgacgtggc 166  Q
    ||||||||||||  |||||||||||||  ||||| ||||||||||  |  |||||||||  | |||||| | |||| |||| |||   | |||  ||||     
T  41912540 tctaaaacaaccattgtaagttaataatattttgtttttcgtcccgtctttcaaactctagtacaaaaaggtcttgttggctaacgacgtgtggtgtggt 41912639  T
Q  167 agatgctgacttggccaaacacgcttatgtggactgacagatgatccctgactatattacagggac 232  Q
     | || ||||||||| ||||||| |||||| |||||||| ||||||| | ||||||||||||||||    
T  41912640 gggtgttgacttggctaaacacgtttatgtagactgacaaatgatccttaactatattacagggac 41912705  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 39884639 - 39884753
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||| || |||||||||||||||| |||||||||||       ||||||||| ||||| |||||||||  | | ||||| |||| |||||| || |||     
T  39884639 tgtaagttcgcgtgtttttggttttagtccctgtatctttttttgttctaaaataacccttgtaagttataagcattttggttttagtccctgccttcat 39884738  T
Q  121 actctgttgcaaaaa 135  Q
    | |||||| ||||||    
T  39884739 aatctgttacaaaaa 39884753  T

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Target: scaffold0489 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 6851 - 6752
Alignment:
Q  21 tgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccctcccgtcaa 120  Q
    ||||||||||||||||||||||||| || ||||||||       ||||||||| | |||||||| ||||||||| ||||| |||||  ||||||||||||    
T  6851 tgtaatttggcgtgtttttggtttttgttcctgtatctttttttgttctaaaatatcccctgtatgttaataactttttgattttctaccctcccgtcaa 6752  T

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Target: scaffold1176 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 2073 - 2165
Alignment:
Q  20 ttgtaatttggcgtgtttttggttttcgtccctgtatcnnnnnnngttctaaaacaacccctgtaagttaataaccttttgcttttcgtccct 112  Q
    |||||| || ||||||||||||||| ||||||||||||       |||||||||||||||| ||||||||  ||| ||||| |||| ||||||    
T  2073 ttgtaagttcgcgtgtttttggtttccgtccctgtatctttttttgttctaaaacaacccccgtaagttataaacgttttggttttagtccct 2165  T

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