View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17462_low_2 (Length: 549)
Name: NF17462_low_2
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 23 - 470
Target Start/End: Complemental strand, 11173761 - 11173314
Alignment:
| Q |
23 |
aggatgaggtaaactttaatttataacattcatatatgatttcaagactcttaatatctaattattagattgtttcctttgaacagcaaagagaagcttc |
122 |
Q |
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| T |
11173761 |
aggatgaggtaaactttaatttttaacattcatatatgatttcaagactcttaatatctaattattacattgtttcctttgaaaagcaaagagaagcttc |
11173662 |
T |
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| Q |
123 |
ttactcaatgcatgaaactggaagtggaagcaatgtggctgcttgggaaaacaatgatccaatggtggggaatcagtactttaatccttcaggattcact |
222 |
Q |
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| T |
11173661 |
ttactcaatgcatgaaactggaagtggaagcaatgtggctgcttgggaaaacaatgatccaatggtggggaatcagtactttaatccttcaggattcact |
11173562 |
T |
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| Q |
223 |
atgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggtcttcttcaatgaatgaaatttccttcagcaactctagtgaccctgactcag |
322 |
Q |
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| T |
11173561 |
atgggtgagggaagcagtagcaaccaaaacatgcatgcagcattaaggtcttcttctatgaatgaaatttccttcagcaattctagtgaccctgactcag |
11173462 |
T |
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| Q |
323 |
aatggattgagcaagttgagcctggaatatttgtcacagtcaggcagtatcctgatgggaacaacgagcttagacgtatcaaattcaggtaacatgctta |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173461 |
aatggattgagcaagttgagcctggaatatttgtcacagtcaggcagtatcctgatgggaacaacgagcttagacgtatcaaattcaggtaacatgctta |
11173362 |
T |
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| Q |
423 |
tgtttaagctatttctatttaataaaagatagtatacgaaaatttcta |
470 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11173361 |
tgtttaagctatttctatataataaaagatagtatacgaaaatttcta |
11173314 |
T |
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