View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17462_low_3 (Length: 497)
Name: NF17462_low_3
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Complemental strand, 8883162 - 8882698
Alignment:
| Q |
17 |
actacataccttgatgaagaactacgtatctcaaggggcgatggtggcagtgtgtttgttcttatcaaggaaggaagttctcttttgacaaactaaagaa |
116 |
Q |
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| T |
8883162 |
actacataccttgatgaagaactacgtatctcaaggggcgatggtggcagtgtgtttgttcttatcaaggaaggaagttctcttttgacaaactaaagaa |
8883063 |
T |
|
| Q |
117 |
attatatgtaataatatccggtgttcaattgttcgtatattcataaataagcaacactggattagatacatattgtgcaaataacttgttgtctgtaaca |
216 |
Q |
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| T |
8883062 |
attatatgtaataatatccagtgttcaattgttcgtatattcataaataagcaacactggattagatacatattgtgcaaataacttgttgtctgtaaca |
8882963 |
T |
|
| Q |
217 |
attttgtatatgtagtatcatccgctgtatattcttacatttgaacatttctatacaaaataattgtcaccattttagatatnnnnnnnnttagttttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8882962 |
attttgtatatgtagtatcatccgctgtatattcttacatttgaacatttctatacaaaataattgtcaccattttagatataaaaaaatttagttttat |
8882863 |
T |
|
| Q |
317 |
aaccatcatttgaactatggagcttattttcaaattcttttaggtgtttcttcagttcaaccatttgaactatgtctttgggaactgtaagcatttgatt |
416 |
Q |
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| T |
8882862 |
aaccatcatttgaactatggagcttattttcaaattcttttaggtgtttcttcagttcaaccatttgaactatgtctttgggacctgtaagcatttgatt |
8882763 |
T |
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| Q |
417 |
attcttttgattgggcaaatattttgattgtatatatggtcattgtattttcgtttcctgttagtgttc |
485 |
Q |
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| T |
8882762 |
attcttttgattgggcaaatattttgattg----tatggtcattgtatttttgtttcctgttagtgttc |
8882698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 8879363 - 8879260
Alignment:
| Q |
17 |
actacataccttgatgaagaactacgtatctcaaggggcgatggtggcagtgtgtttgttcttatcaaggaaggaagttctcttttgacaaactaaagaa |
116 |
Q |
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|||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8879363 |
actacataccttgatgaagaactacgcgtcgcaaggggtgatggtggcagtgtgtttgttcttattaaggaaggaagttctcttttgacaaactaaagaa |
8879264 |
T |
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| Q |
117 |
atta |
120 |
Q |
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|||| |
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| T |
8879263 |
atta |
8879260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 365
Target Start/End: Complemental strand, 8879188 - 8878965
Alignment:
| Q |
152 |
tatattcataaataagcaacactggattagatacatattgtgcaaataacttgttgtctg--------------taacaattttgtatatgtagtatcat |
237 |
Q |
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| T |
8879188 |
tatattcataaataatcaacactggattaggttcaaattgtgcaaatgacttgttgtttgtttgggattgggactcacaattttatatat---gtatcat |
8879092 |
T |
|
| Q |
238 |
ccgctgtatattcttacatttgaacatttctatacaaaataattgtcaccattttagatatnnnnnnnnttagttttataaccatcatttgaactatgga |
337 |
Q |
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| T |
8879091 |
cggttgtatatttctgcatttgagcatttatatacaaaataattgtcaccattttaaatttataaaatgttagttttgcaaccatcatttgaactacgg- |
8878993 |
T |
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| Q |
338 |
gcttattttcaaattcttttaggtgttt |
365 |
Q |
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|| ||||||||||||||||||| |||| |
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| T |
8878992 |
cctcattttcaaattcttttaggggttt |
8878965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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