View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17462_low_4 (Length: 470)
Name: NF17462_low_4
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_4 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Complemental strand, 23922818 - 23922359
Alignment:
| Q |
16 |
ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacca------agccccaagttgtaccaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
23922818 |
ttcagcctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacaccagcaccaagccccaagttgtaccaa |
23922719 |
T |
|
| Q |
110 |
aatgtatgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagtttaccctaaaattactttgatcgaagattatcttacct |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |
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|
| T |
23922718 |
aatgtatgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagcttaccccaaaattactttgattgaagattatcttacct |
23922619 |
T |
|
| Q |
210 |
ttgtcaggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaat |
309 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23922618 |
ttgtcaggtcatttttaaagaatgcggcaataaagaaggcagtaaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaat |
23922519 |
T |
|
| Q |
310 |
caaagaatgtgctaaggattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagt |
409 |
Q |
| |
|
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
23922518 |
caaagaatgtgttgatgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggacactatagacttggatatcaaatatgctagt |
23922419 |
T |
|
| Q |
410 |
gatgcacttggaaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgcc |
469 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23922418 |
gatgcacttggtaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgcc |
23922359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 469
Target Start/End: Complemental strand, 23915169 - 23914722
Alignment:
| Q |
16 |
ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacaccaagccccaagttgtaccaaaatgta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
23915169 |
ttcaacctatttatccattttgctcaccatttcaatgatctttatttcccatgccaattcaccaacaccaa------gcctcaagttgtaccaaaatgta |
23915076 |
T |
|
| Q |
116 |
tgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagtttaccctaaaattactttgatcgaagattatcttacctttgtca |
215 |
Q |
| |
|
|||||| ||||||||| |||||||| |||||||| ||| | ||||| ||||||| ||||||| ||||||||||||| ||||||||||||||||| || |
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|
| T |
23915075 |
tgcaaacaacctggtcagaaagacttcgaacaacgctgtctcaaactaatagaaggttaccctccaattactttgatcaaagattatcttaccttttgca |
23914976 |
T |
|
| Q |
216 |
ggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23914975 |
ggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaacccatcaaaga |
23914876 |
T |
|
| Q |
316 |
atgtgctaaggattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgca |
415 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23914875 |
atgtgctaatgattataatagtgtggttggtcaattaaaagttgcattgattgaagaaccggaccttatagacttggatatcagatatgctagtgatgca |
23914776 |
T |
|
| Q |
416 |
cttggaaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgcc |
469 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23914775 |
cttggaaggtgtgaagatagcttagctcgtgaaaagaatgttaatacgtctgcc |
23914722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 87 - 301
Target Start/End: Complemental strand, 25803163 - 25802949
Alignment:
| Q |
87 |
caccaagccccaagttgtaccaaaatgtatgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagtttaccctaaaattac |
186 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||| ||| || ||||||||||| ||||||||||| |||| || |||||| ||||||| |||| || |
|
|
| T |
25803163 |
caccaagccctaagttgtaccaaaacgtatgtaaagaacccggccaaaaagacttcgaacaacgttgcctgaagctaatagaatcttaccctcaaatcac |
25803064 |
T |
|
| Q |
187 |
tttgatcgaagattatcttacctttgtcaggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaa |
286 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| | |||||||| || |
|
|
| T |
25803063 |
tttgatcgaagattatctaaccttttgcaggtcatttttaaagattgtggcaatagacaaggcaataaaatcccaacaagtagtcagagaaattactgaa |
25802964 |
T |
|
| Q |
287 |
aaatatccttcttct |
301 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25802963 |
aaatatccttcttct |
25802949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 5253011 - 5253072
Alignment:
| Q |
35 |
ttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacaccaagccc |
96 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5253011 |
ttgctcaccatttcaatgatctctatttctcatgccatttcaccaacaccaacacctagccc |
5253072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 25803270 - 25803195
Alignment:
| Q |
16 |
ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacca |
91 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||||||||| ||||| |
|
|
| T |
25803270 |
ttcaacatatttatcatttttgctcaccatttcaatgatgtttatttctcatgctatttcaccaacaccatcacca |
25803195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 24436102 - 24436001
Alignment:
| Q |
220 |
atttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaagaatgt |
319 |
Q |
| |
|
|||||||| ||||| |||||||| ||| |||| |||| ||||||| ||||| |||||||| | |||||| ||||||||||||||| | ||||||| |||| |
|
|
| T |
24436102 |
atttttaaggattgtggcaatagagaatgcaacaaaagcccaacatcaagtcaaagaaatgaagaaaaagtatccttcttctcaaaccatcaaaggatgt |
24436003 |
T |
|
| Q |
320 |
gc |
321 |
Q |
| |
|
|| |
|
|
| T |
24436002 |
gc |
24436001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 23989853 - 23989920
Alignment:
| Q |
23 |
tatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacacc |
90 |
Q |
| |
|
||||||||| | || |||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23989853 |
tatttatccttgttactcaccatctcaatgaactttatttctcatgccatttcaccaacaccaacacc |
23989920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 301
Target Start/End: Original strand, 23995237 - 23995448
Alignment:
| Q |
90 |
caagccccaagttgtaccaaaatgtatgcaaagcacctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagtttaccctaaaattacttt |
189 |
Q |
| |
|
||||||| ||||||||||||| |||||| || | | || | || ||||| ||||||||||| || |||||| |||||| |||||| ||||||||| |
|
|
| T |
23995237 |
caagccctaagttgtaccaaagtgtatgtaaggaatctcgccacaaagattttgaacaacgctgcttgaaaacattagaagcctaccctcaaattacttc |
23995336 |
T |
|
| Q |
190 |
gatcgaagattatcttacctttgtcaggtcatttttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaa |
289 |
Q |
| |
|
|| ||||||||||||||| ||| ||| | || | ||||||||| ||||||| ||| ||| |||| | ||||| ||||| |||||||| | ||| ||| |
|
|
| T |
23995337 |
gaccgaagattatcttacattttccagattatatctaaagattgtggcaataaagaatgcaggaaaagctcaacatcaagtcaaagaaatgaagaacaaa |
23995436 |
T |
|
| Q |
290 |
tatccttcttct |
301 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
23995437 |
tacccttcttct |
23995448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 24436306 - 24436240
Alignment:
| Q |
16 |
ttcaacctatttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaaca |
82 |
Q |
| |
|
|||||| ||| ||||| | ||||||||||| |||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
24436306 |
ttcaacatatctatccttattgctcaccatatcaatgatctttatttctcacgccatttcaccaaca |
24436240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 44 - 320
Target Start/End: Complemental strand, 35074854 - 35074584
Alignment:
| Q |
44 |
atttcaatgatctttgtttctcatgccatttcaccaacaccaacaccaagccccaagttgtaccaaaatgtatgcaaagcacctggtcaaaaagactttg |
143 |
Q |
| |
|
||||||||||||||| ||| ||||||| ||||||||||||||| |||| ||||||||| || | ||||||||| | |||||||||||||||||| |
|
|
| T |
35074854 |
atttcaatgatctttatttgtcatgccctttcaccaacaccaa------gccctaagttgtacgaacgtatatgcaaagaatctggtcaaaaagactttg |
35074761 |
T |
|
| Q |
144 |
aacaacgttgtttgaaacttatagaagtttaccctaaaattactttgatcgaagattatcttacctttgtcaggtcatttttaaagattgcggcaatagg |
243 |
Q |
| |
|
||||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||| |||||||| |
|
|
| T |
35074760 |
aacaacgttgtctcaaacttatagaagcttaccctcaaattactttgatcgaagattatctaactttttgcaggtcatttttaaagattgtggcaataga |
35074661 |
T |
|
| Q |
244 |
gaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaagaatgtg |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
35074660 |
gaaggcagtaaaatcccaacaacaagttaaagagattatgaacaaatatccttcttctcaacccatcaaagaatgtg |
35074584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 35079845 - 35079555
Alignment:
| Q |
25 |
tttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacaccaagccccaagttgtaccaaaatgtatgcaaagca |
124 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||| ||| |||||| |||| | |
|
|
| T |
35079845 |
tttatccgttttgctcgttatttcaatgatctttatttcccatgccatttcacta---ccaacaccaagccccaagttgtacaaaagtgtatgtaaagaa |
35079749 |
T |
|
| Q |
125 |
cctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagtttaccctaaaattactttgatcgaagattatcttacctttgtcaggtcatttt |
224 |
Q |
| |
|
||| |||| ||||| || |||||||||||| | ||||||||||||| ||||||||||||||| |||||| |||||||||| |||||| |||||| |||| |
|
|
| T |
35079748 |
cctcgtcagaaagaattcgaacaacgttgtctcaaacttatagaagcttaccctaaaattaccttgatcaaagattatctaaccttttgcaggtcctttt |
35079649 |
T |
|
| Q |
225 |
taaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaagaatg |
318 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||||| | ||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35079648 |
taaagactgtggcaataaagaaggcaataaaatcccaacatcgagtcaaagaaattgtgaaaaaatatccttcttctcaacctatcaaagaatg |
35079555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 314
Target Start/End: Original strand, 13435800 - 13436084
Alignment:
| Q |
24 |
atttatccattttgctcaccatttcaatgatctttgtttctcatgccatttcaccaacaccaacaccaagccccaagttgtaccaaaatgtatgcaaagc |
123 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||| ||||||| ||||||| ||| |||| ||||||| || |||||| ||| |||||| |||| |
|
|
| T |
13435800 |
atttatccttattgctcaccatatcaatgatctttatttctcacgccattt------cacgaacatcaagccctaatttgtacaaaagtgtatgtaaaga |
13435893 |
T |
|
| Q |
124 |
acctggtcaaaaagactttgaacaacgttgtttgaaacttatagaagtttaccctaaaattactttgatcgaagattatcttacctttgtcaggtcattt |
223 |
Q |
| |
|
| |||| | || || |||||||| ||| ||||||||| ||||| ||||| ||||||||| | |||||||||||||||| || | |||| |
|
|
| T |
13435894 |
aattggtaaggaaccctatgaacaaccttgcttgaaacttttagaaacctacccacaaattacttcagccatagattatcttaccttttcaagattattt |
13435993 |
T |
|
| Q |
224 |
ttaaagattgcggcaatagggaaggcaataaaatcccaacaacaagttaaagaaattatgaaaaaatatccttcttctcaaccaatcaaag |
314 |
Q |
| |
|
|||| ||||| |||||||| || |||| |||| |||||| |||| |||||||| | |||||||||||| ||||||||| | ||||||| |
|
|
| T |
13435994 |
ttaaggattgtggcaatagataatgcaacaaaagtccaacataaagtcaaagaaatgacgaaaaaatatccctcttctcaagccatcaaag |
13436084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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