View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17462_low_6 (Length: 379)

Name: NF17462_low_6
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17462_low_6
NF17462_low_6
[»] chr8 (5 HSPs)
chr8 (11-160)||(14383584-14383733)
chr8 (182-239)||(11393811-11393868)
chr8 (185-223)||(13449215-13449253)
chr8 (173-239)||(24794366-24794432)
chr8 (188-236)||(20888175-20888223)
[»] chr4 (8 HSPs)
chr4 (22-171)||(21422064-21422213)
chr4 (169-275)||(11772948-11773054)
chr4 (173-240)||(29133485-29133552)
chr4 (182-238)||(9691043-9691099)
chr4 (169-256)||(19845575-19845662)
chr4 (173-239)||(42952959-42953025)
chr4 (169-222)||(296325-296378)
chr4 (200-236)||(46218325-46218361)
[»] chr1 (9 HSPs)
chr1 (22-171)||(18994376-18994525)
chr1 (173-236)||(33260147-33260210)
chr1 (173-236)||(33280306-33280369)
chr1 (170-237)||(36099562-36099629)
chr1 (169-237)||(31068714-31068782)
chr1 (170-237)||(22584191-22584258)
chr1 (169-236)||(27364758-27364825)
chr1 (182-239)||(39430897-39430954)
chr1 (183-239)||(27393413-27393469)
[»] chr5 (4 HSPs)
chr5 (12-171)||(26063187-26063349)
chr5 (169-236)||(30723514-30723581)
chr5 (169-232)||(23878035-23878098)
chr5 (175-220)||(12162123-12162168)
[»] chr7 (5 HSPs)
chr7 (170-261)||(27544066-27544157)
chr7 (169-226)||(34236251-34236308)
chr7 (169-234)||(29375704-29375769)
chr7 (169-229)||(38153693-38153753)
chr7 (175-223)||(1364941-1364989)
[»] chr6 (7 HSPs)
chr6 (173-240)||(24573735-24573802)
chr6 (173-236)||(32197820-32197883)
chr6 (179-218)||(17110601-17110640)
chr6 (206-272)||(14362829-14362895)
chr6 (169-234)||(34600891-34600956)
chr6 (169-234)||(34627436-34627501)
chr6 (169-234)||(34722168-34722233)
[»] chr2 (6 HSPs)
chr2 (175-256)||(12807607-12807688)
chr2 (169-237)||(21579650-21579718)
chr2 (173-223)||(10289520-10289570)
chr2 (167-240)||(12605888-12605961)
chr2 (183-236)||(15139529-15139582)
chr2 (169-236)||(20947136-20947204)
[»] scaffold0128 (1 HSPs)
scaffold0128 (184-240)||(41195-41251)
[»] chr3 (8 HSPs)
chr3 (171-222)||(25132743-25132794)
chr3 (169-239)||(10868223-10868293)
chr3 (169-239)||(21739973-21740043)
chr3 (169-238)||(41367752-41367821)
chr3 (180-240)||(8948482-8948542)
chr3 (169-220)||(20367185-20367236)
chr3 (169-226)||(35502962-35503019)
chr3 (169-237)||(38456774-38456842)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 14383733 - 14383584
Alignment:
Q  11 gagatgaagacggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtga 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14383733 gagatggagacggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacgatcgcacggtga 14383634  T
Q  111 aggatggaggaggatgaggtgttgctgctctctagagagaagaagaagga 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14383633 aggatggaggaggatgaggtgttgctgctctctagagagaagaagaagga 14383584  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 11393811 - 11393868
Alignment:
Q  182 agggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    |||||||||||||| || ||||| ||||| ||||||||||||||| |||| |||||||    
T  11393811 agggagtttaattttgcattgttaggtaaatggtgttggaggttgttggtcgatagag 11393868  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 13449253 - 13449215
Alignment:
Q  185 gagtttaatttggcgttgttgggtaagtggtgttggagg 223  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  13449253 gagtttaatttagcgttgttggggaagtggtgttggagg 13449215  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 24794432 - 24794366
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    |||||| | |||||||||||||| || ||||| ||||| |||||||||||| || |||| |||||||    
T  24794432 aggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagag 24794366  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 20888223 - 20888175
Alignment:
Q  188 tttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    ||||||||| |||| || || ||||||||||||||||||||||| ||||    
T  20888223 tttaatttgtcgttattagggaagtggtgttggaggttgatggtagata 20888175  T

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Target: chr4 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 21422213 - 21422064
Alignment:
Q  22 ggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtgaaggatggagga 121  Q
    |||||| ||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21422213 ggatgaagtctgaactaaaaacgatacagagggagggtgtggtagcggtgatagatggaggaggaggaggcatcacggtcacacggtgaaggatggagga 21422114  T
Q  122 ggatgaggtgttgctgctctctagagagaagaagaaggaggaatcgcggt 171  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21422113 ggatgaggtgttgctgttctctagagagaagaagaaggaggaatcgcggt 21422064  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 169 - 275
Target Start/End: Original strand, 11772948 - 11773054
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagagacaatctttggtttagactattggctgcg 268  Q
    ||||| |||||||||||||||||| |||||  | |||||||||||||||||||||||| ||||||||| |||   | | |||||||||||||| || ||     
T  11772948 ggtaaagagaattagggagtttaacttggcactattgggtaagtggtgttggaggttgttggtggataaagagggtatgtggtttagactattagcagct 11773047  T
Q  269 agatatg 275  Q
    |||||||    
T  11773048 agatatg 11773054  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 29133552 - 29133485
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagaga 240  Q
    |||||| ||||||||||||| |||||||||||||| |||||||| |||||| || |||||||||||||    
T  29133552 aggagacttagggagtttaacttggcgttgttgggaaagtggtgatggaggatggtggtggatagaga 29133485  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 9691099 - 9691043
Alignment:
Q  182 agggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggataga 238  Q
    ||||| ||||||||  | ||||||||||| ||||||||||||||| |||||||||||    
T  9691099 agggaatttaatttaaccttgttgggtaaatggtgttggaggttgttggtggataga 9691043  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 19845575 - 19845662
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagagacaatctttggtttaga 256  Q
    |||||||||||||||||||||||| |  ||  | || ||||||||||||||| ||||| ||||||| || || | | |||||||||||    
T  19845575 ggtaaggagaattagggagtttaactatgctcttttaggtaagtggtgttggcggttgttggtggagagggatagtttttggtttaga 19845662  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 42952959 - 42953025
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    |||||| | |||||||||||||| || ||||| ||||| |||||||||||| || |||| |||||||    
T  42952959 aggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagag 42953025  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 296325 - 296378
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggag 222  Q
    ||||||||||| ||||||| |||||   |||||||| |||||||||||||||||    
T  296325 ggtaaggagaagtagggagattaataatgcgttgttaggtaagtggtgttggag 296378  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 46218325 - 46218361
Alignment:
Q  200 ttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  46218325 ttgttgggtaagtggtgttggaggttgttggttgata 46218361  T

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Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 18994376 - 18994525
Alignment:
Q  22 ggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtgaaggatggagga 121  Q
    |||||| ||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18994376 ggatgaagtctgaactgaaaacgatacagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtgaaggatggagga 18994475  T
Q  122 ggatgaggtgttgctgctctctagagagaagaagaaggaggaatcgcggt 171  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  18994476 ggatgaggtgttgctgctctctagagagaagaaggaggaggaattgcggt 18994525  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 33260147 - 33260210
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||| || | |||||||    
T  33260147 aggagacttagggagtttaatttggcgttgttagggaagtggtgttggaggatggtagtggata 33260210  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 33280306 - 33280369
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||| || | |||||||    
T  33280306 aggagacttagggagtttaatttggcgttgttagggaagtggtgttggaggatggtagtggata 33280369  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 36099629 - 36099562
Alignment:
Q  170 gtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatag 237  Q
    ||||||||||||||||||||| |||| |||||||| |||  |||||||||| ||||| |||| |||||    
T  36099629 gtaaggagaattagggagtttgatttagcgttgttaggtgggtggtgttggcggttgttggtagatag 36099562  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 31068714 - 31068782
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatag 237  Q
    ||||| ||| ||||||||||||||||| || || || || |||||||||||| ||||| ||||||||||    
T  31068714 ggtaatgagtattagggagtttaattttgctttattagggaagtggtgttggcggttgttggtggatag 31068782  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 22584258 - 22584191
Alignment:
Q  170 gtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatag 237  Q
    |||||||||| ||||||||||||| | || || ||||  | |||||||||||||||| ||||||||||    
T  22584258 gtaaggagaagtagggagtttaatgttgccttattggagacgtggtgttggaggttgttggtggatag 22584191  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 27364825 - 27364758
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    ||||||||||||||||||||||||||| || ||||  || || ||| ||||||||||| ||| |||||    
T  27364825 ggtaaggagaattagggagtttaatttagcattgtcagggaaatggggttggaggttgttggaggata 27364758  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 39430954 - 39430897
Alignment:
Q  182 agggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    |||||||||||||  || ||||| |||||||||||||||||| || |||| |||||||    
T  39430954 agggagtttaattgtgctttgttaggtaagtggtgttggaggatgttggtagatagag 39430897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 27393413 - 27393469
Alignment:
Q  183 gggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    ||||||||||| | || ||||| || |||||||||||||||||| |||| |||||||    
T  27393413 gggagtttaatcttgcattgttaggaaagtggtgttggaggttgttggttgatagag 27393469  T

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Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 26063349 - 26063187
Alignment:
Q  12 agatgaagacggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatgga----ggaggaggaggcatcacggtcgcacgg 107  Q
    ||||||||| |||||| ||| ||||| ||||| ||| ||||||||||||||||||||||||||||||||    |||||||||||||||| ||||||||||    
T  26063349 agatgaaga-ggatgaagtctgaactgaaaacgatatagagggagggtgtggtagcggtgatggatggatggaggaggaggaggcatcatggtcgcacgg 26063251  T
Q  108 tgaaggatggaggaggatgaggtgttgctgctctctagagagaagaagaaggaggaatcgcggt 171  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26063250 tgaaggatggaggaggatgaggtgctgctgctctctagagagaagaagaaggaggaatcgcggt 26063187  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 30723581 - 30723514
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    ||||||||||||||||||||||||||| |||||||| || || ||||||||||||||| ||| |||||    
T  30723581 ggtaaggagaattagggagtttaatttagcgttgttagggaaatggtgttggaggttgttggaggata 30723514  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 23878035 - 23878098
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtg 232  Q
    ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||| ||| |||||    
T  23878035 ggtaaggtgaattagggagtttagtttggcattgctgggtaagtggtgttggagattgttggtg 23878098  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12162123 - 12162168
Alignment:
Q  175 gagaattagggagtttaatttggcgttgttgggtaagtggtgttgg 220  Q
    ||||||||||||||||||| ||||  ||||||||||||||| ||||    
T  12162123 gagaattagggagtttaatatggccatgttgggtaagtggtattgg 12162168  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 27544066 - 27544157
Alignment:
Q  170 gtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagagacaatctttggtttagactatt 261  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||   | | ||||||||||||||    
T  27544066 gtaaggagaattagagagtttaacttggcgctgttgggtaagtggtgttggaggttgttggtggatagagagggtatgtggtttagactatt 27544157  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 34236251 - 34236308
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttg 226  Q
    ||||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||    
T  34236251 ggtaaggagaattagggagtttaatttagcgttgttagagaagtggtgttggaggttg 34236308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 29375769 - 29375704
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtgga 234  Q
    ||||||||||||||||||||||||| |||||||  | || |||||||||||| || || |||||||    
T  29375769 ggtaaggagaattagggagtttaatatggcgttactagggaagtggtgttggcggatgttggtgga 29375704  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 38153693 - 38153753
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatg 229  Q
    ||||||||||||||| ||||||||| | || ||||| || |||| ||||||||||||||||    
T  38153693 ggtaaggagaattagtgagtttaatattgcattgttagggaagtagtgttggaggttgatg 38153753  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 1364941 - 1364989
Alignment:
Q  175 gagaattagggagtttaatttggcgttgttgggtaagtggtgttggagg 223  Q
    |||||| || |||||||||||  ||||||||||||||| ||||||||||    
T  1364941 gagaatcagagagtttaatttaacgttgttgggtaagtagtgttggagg 1364989  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 24573802 - 24573735
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagaga 240  Q
    |||||| ||||||||||||| |||||| ||||||| ||||||||||||||| || | |||||||||||    
T  24573802 aggagacttagggagtttaacttggcgctgttgggaaagtggtgttggaggatggtagtggatagaga 24573735  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 32197883 - 32197820
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    ||||||||||||||||||||| |||| ||| ||||||| ||||| ||||||||| ||| |||||    
T  32197883 aggagaattagggagtttaatatggctttgctgggtaaatggtgctggaggttgttggaggata 32197820  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 17110601 - 17110640
Alignment:
Q  179 attagggagtttaatttggcgttgttgggtaagtggtgtt 218  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  17110601 attagggagtttaatattgcgttgttgggtaagtggtgtt 17110640  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 14362895 - 14362829
Alignment:
Q  206 ggtaagtggtgttggaggttgatggtggatagagacaatctttggtttagactattggctgcgagat 272  Q
    ||||||||||||||||||||| |||||||| ||||   | ||||||||||||| || ||||| ||||    
T  14362895 ggtaagtggtgttggaggttgttggtggatcgagagggtttttggtttagactgttagctgctagat 14362829  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 34600956 - 34600891
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtgga 234  Q
    |||||||||||||||||||||||||   ||||||||  | |||||||||||| || || |||||||    
T  34600956 ggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtgga 34600891  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 34627501 - 34627436
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtgga 234  Q
    |||||||||||||||||||||||||   ||||||||  | |||||||||||| || || |||||||    
T  34627501 ggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtgga 34627436  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 34722233 - 34722168
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtgga 234  Q
    |||||||||||||||||||||||||   ||||||||  | |||||||||||| || || |||||||    
T  34722233 ggtaaggagaattagggagtttaatagtgcgttgttaaggaagtggtgttggcggatgttggtgga 34722168  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 12807607 - 12807688
Alignment:
Q  175 gagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagagacaatctttggtttaga 256  Q
    |||||||||||||||||||||  |  |||| || |||||||||||||| ||| |||||||||||||   |||||||||||||    
T  12807607 gagaattagggagtttaatttatctctgttagggaagtggtgttggagattgttggtggatagagagggtctttggtttaga 12807688  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 21579718 - 21579650
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatag 237  Q
    |||||||||||||||||||||||||   || || || || |||||||||||||||||| ||||||||||    
T  21579718 ggtaaggagaattagggagtttaatagtgctttattagggaagtggtgttggaggttgctggtggatag 21579650  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 10289520 - 10289570
Alignment:
Q  173 aggagaattagggagtttaatttggcgttgttgggtaagtggtgttggagg 223  Q
    ||||||||||| |||||||| ||| | ||||| ||||||||||||||||||    
T  10289520 aggagaattagagagtttaacttgtctttgttaggtaagtggtgttggagg 10289570  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 12605888 - 12605961
Alignment:
Q  167 gcggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagaga 240  Q
    ||||||||||||||||| || |||||| | || || || || |||||||||||||||||| || | ||||||||    
T  12605888 gcggtaaggagaattagagattttaatgttgctttattagggaagtggtgttggaggttgttgatagatagaga 12605961  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 15139529 - 15139582
Alignment:
Q  183 gggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggata 236  Q
    |||| ||||||||| | || || || ||||||||||||||||||||||||||||    
T  15139529 gggaatttaatttgtcattattagggaagtggtgttggaggttgatggtggata 15139582  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 20947136 - 20947204
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgtt-gggtaagtggtgttggaggttgatggtggata 236  Q
    ||||||||||||||||||||||||| | |||||||| ||| ||  || ||||||||||| ||| |||||    
T  20947136 ggtaaggagaattagggagtttaatatagcgttgttagggaaatgggggttggaggttgttggaggata 20947204  T

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Target: scaffold0128 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 41195 - 41251
Alignment:
Q  184 ggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagaga 240  Q
    |||||||||||||| |||||||| ||| |||||||||||||||  ||||||||||||    
T  41195 ggagtttaatttggtgttgttggataaatggtgttggaggttgcaggtggatagaga 41251  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 25132794 - 25132743
Alignment:
Q  171 taaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggag 222  Q
    ||||||||||||| ||||||||| |||||||| ||||||| |||||||||||    
T  25132794 taaggagaattagagagtttaatatggcgttgctgggtaaatggtgttggag 25132743  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 10868293 - 10868223
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    |||||||||| | |||||||||||||| || ||||| ||||| |||||||||||| || |||| |||||||    
T  10868293 ggtaaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagag 10868223  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 21739973 - 21740043
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagag 239  Q
    |||||||||| | |||||||||||||| || ||||| ||||| |||||||||||| || |||| |||||||    
T  21739973 ggtaaggagattgagggagtttaattttgctttgttaggtaaatggtgttggaggatgttggtagatagag 21740043  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 41367752 - 41367821
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggataga 238  Q
    ||||| ||| ||| ||||||| ||| | || ||||||||||||||||||| ||||||| |||||||||||    
T  41367752 ggtaaagaggatttgggagttcaatgttgctttgttgggtaagtggtgttagaggttgttggtggataga 41367821  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 8948482 - 8948542
Alignment:
Q  180 ttagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatagaga 240  Q
    |||||| |||||| |||||||||||||| || |||||||||||| || | |||||||||||    
T  8948482 ttagggggtttaacttggcgttgttggggaaatggtgttggaggatggtagtggatagaga 8948542  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 20367236 - 20367185
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttgg 220  Q
    |||||||||||| |||||||| ||||||| |||| | |||||||||||||||    
T  20367236 ggtaaggagaatgagggagttgaatttggtgttgctaggtaagtggtgttgg 20367185  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 35502962 - 35503019
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttg 226  Q
    |||||||||||||||||||||||||   || ||||| || |||||||||||| |||||    
T  35502962 ggtaaggagaattagggagtttaatagtgctttgtttgggaagtggtgttggcggttg 35503019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 38456842 - 38456774
Alignment:
Q  169 ggtaaggagaattagggagtttaatttggcgttgttgggtaagtggtgttggaggttgatggtggatag 237  Q
    ||||||||||||||||||||||||| | || || || || |||||| |||||||||   ||||||||||    
T  38456842 ggtaaggagaattagggagtttaatattgctttattaggcaagtggggttggaggtgtttggtggatag 38456774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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