View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17462_low_8 (Length: 363)
Name: NF17462_low_8
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 25420105 - 25419876
Alignment:
| Q |
14 |
gaaggtgagagaagagagagcgagaagcgtagcggaagaggttggttttggtggatatcatggacgccatgtgtttgatgaaatgaagctttgaaccttt |
113 |
Q |
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| T |
25420105 |
gaaggtgagagaagagagagcgagaagcgtagcggaagaggttggttttggtggatatcatggacgccatgtgtttgatgaaatgaagctttgaaccttt |
25420006 |
T |
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| Q |
114 |
gagggttttgtatttgtaaattgaacacgtcaaggtttaagggtct-agaacttgaagaagaagaatcttctaattaacaacccaaaaccttttttgctt |
212 |
Q |
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| T |
25420005 |
gagggttttgtatttgtaaattgaacacgtcaaggtttaagggtctaagaactt---gaagaagaaccttctaattaacaacccaaaaccttttttgctt |
25419909 |
T |
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| Q |
213 |
tgaagaaaacccaaccttacggaaaatgaaaaat |
246 |
Q |
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| T |
25419908 |
tgaag-aaacccaaccttacggaaaatgaaaaat |
25419876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 246 - 319
Target Start/End: Complemental strand, 25416434 - 25416361
Alignment:
| Q |
246 |
tggtatgtaaaataaacgtgtatttttcgtattagagcaagtgtcaatcttaaaataaaagtaaaattctctcc |
319 |
Q |
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| T |
25416434 |
tggtatgtaaaataaacgtgtatttttcgtattagagcaagtgtaaatcttaaaataaaagtaaaattctctcc |
25416361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 17580743 - 17580778
Alignment:
| Q |
276 |
attagagcaagtgtcaatcttaaaataaaagtaaaa |
311 |
Q |
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| T |
17580743 |
attagagcaagtgtcaatcttaaaacaaaagtaaaa |
17580778 |
T |
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