View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17462_low_9 (Length: 351)
Name: NF17462_low_9
Description: NF17462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17462_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 339
Target Start/End: Original strand, 34483248 - 34483567
Alignment:
| Q |
20 |
atactgatgtttcttatctcaataaacgatatgtattttaatatgctggtggcataacttatgcttttcggctattaaacttttatttttggttacaata |
119 |
Q |
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| T |
34483248 |
atactgatgtttcttatctcaataaacgatatgtattttaatatgctggtggcataacttatgcttttcggctattaaacttttatttttggttacaata |
34483347 |
T |
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| Q |
120 |
cattaaaagatnnnnnnnnnnnnnnnnnnnnnctacaatcttaaatagaaggaaaaattattcttgcagtcccttaacttaatttcaaaaaacaatttcg |
219 |
Q |
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| T |
34483348 |
cattaaaagataaaaaaaacgaaaaaaaaaaactacaatcttaaatagaaggaaaaattactcttgtagttcattaacttaatttcaaaaaacaatttcg |
34483447 |
T |
|
| Q |
220 |
tcttttaannnnnnncacttcattttgatccttatggtccatttgaatataaattttcaagcttccattatatgtgtgatgctaatgattgatgtttata |
319 |
Q |
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| T |
34483448 |
tcttttaatttttttcacttcattttgatccttatggtccatttgaatatgaattttcaagcttcaattatatgtgtgatgctaatgattgatgtttata |
34483547 |
T |
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| Q |
320 |
tgttgtgtatggtttatatt |
339 |
Q |
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|||||||||||||||||||| |
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| T |
34483548 |
tgttgtgtatggtttatatt |
34483567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 34394191 - 34394148
Alignment:
| Q |
296 |
tgatgctaatgattgatgtttatatgttgtgtatggtttatatt |
339 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
34394191 |
tgatcctaatgattgatgtttatatgttttgtatggtttatatt |
34394148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 34388302 - 34388266
Alignment:
| Q |
296 |
tgatgctaatgattgatgtttatatgttgtgtatggt |
332 |
Q |
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||||||| ||||||||||||||||||||||||||||| |
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| T |
34388302 |
tgatgctgatgattgatgtttatatgttgtgtatggt |
34388266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 34393328 - 34393294
Alignment:
| Q |
304 |
atgattgatgtttatatgttgtgtatggtttatat |
338 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
34393328 |
atgattgatgtttaaatgttgtgtatggtttatat |
34393294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 34484357 - 34484391
Alignment:
| Q |
304 |
atgattgatgtttatatgttgtgtatggtttatat |
338 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
34484357 |
atgattaatgtttatatgttgtgtatggtttatat |
34484391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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