View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17463_high_4 (Length: 536)
Name: NF17463_high_4
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 454
Target Start/End: Original strand, 38042798 - 38043260
Alignment:
| Q |
9 |
gagaagcataggtaattgaggcgtttgaggttgtttcttcttcttgttctaaatgtagttggcatggttatagaaagtttagaaggtgtgaaagtgtaat |
108 |
Q |
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| T |
38042798 |
gagaaacataggtaattgaggcgtttgaggttgtttcttcttcttgttctaagtgtagttggcatggttatagaaagtttagaaggtgtgaaagtgtaat |
38042897 |
T |
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| Q |
109 |
aagagggtgatggattgaaaagaagggaaggaaggtgtttggttgatggttatatatagtagttagttgttgttaattgtgatttgccaatgcctaagtg |
208 |
Q |
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| T |
38042898 |
aagagggtgatggattgaaaagaagggaaggaaggtgtttggttgatggttatatatagtagttagttgctgttaattgtgatttgccaatgcctaagtg |
38042997 |
T |
|
| Q |
209 |
ggaacgtggattagtatgttatc-nnnnnnnnnnnnnnnnnngttgtagcacggataaggacnnnnnnnaattgataaatgaatgaatactaataaattg |
307 |
Q |
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| T |
38042998 |
ggaacgtggattagtatgttatcaaaaacaaaacaaaaaaaagttgtagcacggataaggactttttttaattgataaatgaatgaatactaataaattg |
38043097 |
T |
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| Q |
308 |
gaaataagagaaaaataaatgattcggtgacttttgggttagtacgaaggatccatgt----------------ttaaatgtgacgtgtaaatgtgagga |
391 |
Q |
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| T |
38043098 |
gaaataagagaaaaataaatgattcggtgacttttgggttagtacgaaggatccatgttgtttggttactagtgtttaaggtgacgtgtaaatgtgagga |
38043197 |
T |
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| Q |
392 |
cttataatgtagtagcggagatgatgctcaatagtttggtgtacatccaaacaattgacactt |
454 |
Q |
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| T |
38043198 |
cttataatgtagtagcggagatgatgctcaatagtgtggtgtacatccaaacaattgacactt |
38043260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 12831080 - 12831048
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
12831080 |
attgtcacctaagggtgtctatgtatcattact |
12831048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 470 - 498
Target Start/End: Original strand, 36875678 - 36875706
Alignment:
| Q |
470 |
ctaagggtgtctatgtatcattacttttt |
498 |
Q |
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| T |
36875678 |
ctaagggtgtctatgtatcattacttttt |
36875706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 480514 - 480546
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
480514 |
attgtcacctaagggtgtctatgtatcattact |
480546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 54473600 - 54473632
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
54473600 |
attgtcacctaagggtgtctatgtatcattact |
54473632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 4060718 - 4060686
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
4060718 |
attgtcacctaagggtgtctatgtatcattact |
4060686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 10249449 - 10249481
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
10249449 |
attgtcacctaagggtgtctatgtatcattact |
10249481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Complemental strand, 13438376 - 13438344
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
13438376 |
attgtcacctaagggtgtctatgtatcattact |
13438344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 494
Target Start/End: Original strand, 32505715 - 32505747
Alignment:
| Q |
462 |
attgtcagctaagggtgtctatgtatcattact |
494 |
Q |
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| T |
32505715 |
attgtcacctaagggtgtctatgtatcattact |
32505747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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