View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17463_high_5 (Length: 442)
Name: NF17463_high_5
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 55083370 - 55083794
Alignment:
| Q |
1 |
ttttgtctagagttttcgtttgttaactcaagcatatagcttcttcnnnnnnnnnnnnaaggttcaagcatatagatatatgctactaacaaatttctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55083370 |
ttttgtctagagttttcgtttgttaactcaagcatatagcttcttctttttgttttttaaggttcaagcatatagatatatggtactaacaaatttctta |
55083469 |
T |
|
| Q |
101 |
gccttagagatttttgttaacaaaaacttgtgcttcttgcatttatttctttgtttgggttaaaattggacttgcatcctgattagtttagaacaaatgt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55083470 |
gctttagagatttttgttaacaaaaacttgtgcttcttgcatttatttctttgtttgggttaaaattggacttgcatcctgattagtttagaacaaatgt |
55083569 |
T |
|
| Q |
201 |
tcttaagttttgcactgaaaataatgataatcataaggtatttggtaggaaatttggatctaaccaattaggtttctatcacagagatgagtggttgaca |
300 |
Q |
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| T |
55083570 |
tattaagttttgcactgaaaatattcataatcataaggtatttggtaggaaatttggatctaaccaattaggtttctatcacagagatgagtggttgaca |
55083669 |
T |
|
| Q |
301 |
ccttaccgcaaatttagcagacagacgccaatcttgaataacgaccaaaataaaacttgatgtcccttacaattggccacagacactgttgtctctgtct |
400 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
55083670 |
ccttaccgcaaatttagcagacagatgccaatcttgaataacgaccaaaataaaacttgatgtcccttacaattgaccacagacactgttgtctctgtct |
55083769 |
T |
|
| Q |
401 |
gctaaattagtttatagagcaaact |
425 |
Q |
| |
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| T |
55083770 |
gctaaattagtttatagagcaaact |
55083794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 50907797 - 50907881
Alignment:
| Q |
231 |
tcataaggtattt-ggtaggaaatttggatctaaccaattaggtttctatcacagagatgagtggttgacaccttaccgcaaatt |
314 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
50907797 |
tcataaggtattttggtcggaaatgtggatctaaccaattaggtttgcatcacaaagatgagtggttgacaccttacctcaaatt |
50907881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 38041084 - 38041032
Alignment:
| Q |
231 |
tcataaggtatttggtaggaaatttggatctaaccaattaggtttctatcaca |
283 |
Q |
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||||||||||||||||||||||| || ||| ||||||||||||||| |||||| |
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|
| T |
38041084 |
tcataaggtatttggtaggaaatgtgaatcgaaccaattaggtttccatcaca |
38041032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 38029705 - 38029661
Alignment:
| Q |
207 |
gttttgcactgaaaataatgataat-cataaggtatttggtagga |
250 |
Q |
| |
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||||||||| ||||||||| ||||| ||||||||||||||||||| |
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|
| T |
38029705 |
gttttgcacagaaaataatcataattcataaggtatttggtagga |
38029661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 3071898 - 3071829
Alignment:
| Q |
238 |
gtatttggtaggaaatttggatctaaccaattaggtttctatcacagagatgagtggttgacaccttacc |
307 |
Q |
| |
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|||||||||||||||| ||||||||| | |||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
3071898 |
gtatttggtaggaaatgtggatctaatctattaggtttccatcacaaagatgagtggttgacaccttacc |
3071829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 21605696 - 21605652
Alignment:
| Q |
207 |
gttttgcactgaaaataatgataat-cataaggtatttggtagga |
250 |
Q |
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||||||||| ||||||||| ||||| ||||||||||||||||||| |
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| T |
21605696 |
gttttgcacagaaaataatcataattcataaggtatttggtagga |
21605652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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