View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17463_high_6 (Length: 396)
Name: NF17463_high_6
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 34669884 - 34669508
Alignment:
| Q |
1 |
caaatatcaattccaacaagagacaaaagcagtgaaaagaattccttacagtgtccaaaagaataatagttagaatgctgctgaccttctccttgcattc |
100 |
Q |
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| T |
34669884 |
caaatatcaattccaacaagagacaaaagcagtgaaaagaattccttacagtttccaaaagaataatacttagaatgctgctgaccttctccttgcattc |
34669785 |
T |
|
| Q |
101 |
ccatatgttgattggtaataatattatgatccacagtcactttagtcccagaactacttgcaagactttgcaaataattgggttgtgaaggttgccaaac |
200 |
Q |
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| T |
34669784 |
ccatatgttgattggtaataatattatgatccacagtcactttagtcccagaactacttgcaagactttgcaaataattgggttgtgaaggttgccaaac |
34669685 |
T |
|
| Q |
201 |
attaggaccagcaacaacacagttcaataaatttgtttcctcgttttgcaaagcacctatacttccaaagctatttcctccataaggatattcaaaatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669684 |
attaggaccagcaacaacacagttcaataaatttgtttcctcgttttgcaaagcacctatacttccaaagctatttcctccataaggatattcaaaatag |
34669585 |
T |
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| Q |
301 |
ggattgtgtacaacattgttgttagccacaaaaggggcctcaaaagaagaccaatttccattgcttgaaacaggtac |
377 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34669584 |
ggattatgtacaacattgttgttagccacaaaaggggcctcaaaagaagaccaatttccattgcttgaaacaggtac |
34669508 |
T |
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