View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17463_high_7 (Length: 385)
Name: NF17463_high_7
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 8484346 - 8484697
Alignment:
| Q |
19 |
aatcagttataatcaagaactcgtcaacacaatagaaagcaatgttaagtttcaaaatcatttatggttcgttagaaaataaacccaaatatgcacttaa |
118 |
Q |
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| T |
8484346 |
aatcagttataatcaagaactcttcaacacaatagaaaacaatgttaagtttcaaaatcatttttggttctttagaaaataaacccaaatatgcacttaa |
8484445 |
T |
|
| Q |
119 |
ataagtccgaaaaaagatatctttcatcctatcaagcgtcaactagctaatatttttgtgctcgagatgggtgtttttctctccatttcagagaagagta |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8484446 |
ataagtccgaaaaaagatatatttcatcctatcaagcgtcaactagctaatatttttgtgctcgagatgggtgtttttctctccatttgagagaagagta |
8484545 |
T |
|
| Q |
219 |
tatgatttcttcaacattgttgagatgcaaaacctacacattgagagggaggataatggagacttggaactacccatggaaccaatacaacaagaagaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8484546 |
tatgatttcttcaacattgttgagatgcaaaacctacacattgagaaggaggataatgaagacttggaactacccatggaaccaatacaacaagaagaag |
8484645 |
T |
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| Q |
319 |
tcagttgcagttgtagcttgtgttatgtatagtgaggaggtttttgacatatgggcct |
376 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8484646 |
tcagttgc------agcttgtgttatgtatagtgaggaggtttttgacatataggcct |
8484697 |
T |
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