View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17463_low_1 (Length: 768)
Name: NF17463_low_1
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 215 - 758
Target Start/End: Original strand, 33177884 - 33178428
Alignment:
| Q |
215 |
caattttcttagttttatcatcattcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctatttttggt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33177884 |
caattttcttagttttatcatcattcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctatttttggt |
33177983 |
T |
|
| Q |
315 |
tagtatataaaagaattcctccttttatcaaaaaagaaagaagactaattgatccactatacgagtccatgagaaggcgatcacactttgtgggggcaga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33177984 |
tagtatataaaagaattcctccttttatcaaaaaagaaagaagaataattgatccactatacgagtccatgagaaggcgatcacactttgtgggggcagg |
33178083 |
T |
|
| Q |
415 |
gttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtata |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178084 |
gttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtata |
33178183 |
T |
|
| Q |
515 |
tgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaatt |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178184 |
tgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaatt |
33178283 |
T |
|
| Q |
615 |
aaaagatctatttcagatttgtggatggaggaacataaaataagttaagg-nnnnnnnnnnacaaggaataagttatggttattctgcaccacttttact |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
33178284 |
aaaagatctatttcagatttgtggatggaggaacataaaataagttaaggttttttattttacaaggaataagttaaggttattctgcacaactttcact |
33178383 |
T |
|
| Q |
714 |
ttaatccctttcttactctccacacttaccgtaccatgatgatgt |
758 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33178384 |
ttaatccgtttcttactctccacacttaccgtaccatgatgatgt |
33178428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 33177673 - 33177818
Alignment:
| Q |
1 |
tggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaattttatttaca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33177673 |
tggttcatgagtagt-gatagtggaaaacacaaacataaaagttgggaatgaaatggtaaacaacaattacagtttttgggtgttttaattttatttaca |
33177771 |
T |
|
| Q |
101 |
gattgcataatgtgaagaaaggaattcagcggcagttaactgccggc |
147 |
Q |
| |
|
|| ||| |||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
33177772 |
gagtgcgtaatatgaagaaaggaattcagcagcagttaactgccggc |
33177818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 44810045 - 44809912
Alignment:
| Q |
4 |
ttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaattttatttacagat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44810045 |
ttcatgagtagttgatagtggaaaacacaaacataagagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaattttatttacagag |
44809946 |
T |
|
| Q |
104 |
tgcataatgtgaagaaaggaattcagcggcagttaac |
140 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||| |
|
|
| T |
44809945 |
tg---tatgtgaagaaaggaattcagcggtagttaac |
44809912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 44809898 - 44809856
Alignment:
| Q |
128 |
agcggcagttaactgccggcggtttctccaacagtagttaact |
170 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
44809898 |
agcggcagttaactgccggcggtttttccaacggtagttaact |
44809856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 20086109 - 20086238
Alignment:
| Q |
12 |
tagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaattttatttacagattgcataat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
20086109 |
tagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttatgggtgttttaattttatttacagagtgcataat |
20086208 |
T |
|
| Q |
112 |
gtgaagaaaggaattcagcggcagttaact |
141 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
20086209 |
gtgaagaaaggaattcagcggtagttaact |
20086238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 17852408 - 17852498
Alignment:
| Q |
4 |
ttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaatttta |
94 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17852408 |
ttcatgagtagttgagagtggaaaacacaaacataaaagctgcgagtgaaatggtgaagaacaattacagtttttgggtattttaatttta |
17852498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 7250142 - 7250081
Alignment:
| Q |
127 |
cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta |
188 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||| ||| |||| ||||||| |
|
|
| T |
7250142 |
cagcggcagttaaccgccgacggttcttccaacagtagttaactaccgctggagacttttta |
7250081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 30497763 - 30497821
Alignment:
| Q |
112 |
gtgaagaaaggaattcagcggcagttaactgccggcggtttctccaacagtagttaact |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
30497763 |
gtgaagaaaggaattcagcggcagttaactgccggcggtttccccaacggtagttaact |
30497821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 239 - 311
Target Start/End: Complemental strand, 9598491 - 9598419
Alignment:
| Q |
239 |
tcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctattttt |
311 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||| |
|
|
| T |
9598491 |
tcatcatcatgttgctacaaatttgtgtaaatgtattcattcgtcctatagtcatacatgccaatctattttt |
9598419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 45414368 - 45414325
Alignment:
| Q |
127 |
cagcggcagttaactgccggcggtttctccaacagtagttaact |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||||| |
|
|
| T |
45414368 |
cagcggcagttaactgccgccggtttctccaacggttgttaact |
45414325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 17915245 - 17915184
Alignment:
| Q |
127 |
cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta |
188 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| |||||||||| ||| || ||||||||| |
|
|
| T |
17915245 |
cagcggcagttaactgtcggcgatttttccaacggtagttaactaccgctgggggcttttta |
17915184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 13706198 - 13706137
Alignment:
| Q |
127 |
cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta |
188 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||| |||||||||| |||| || ||||||||| |
|
|
| T |
13706198 |
cagcagcagttaactgtcggcggttttcccaacggtagttaactaccgttgggggcttttta |
13706137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 15292752 - 15292809
Alignment:
| Q |
130 |
cggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttt |
187 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| |||||||||| || ||||||||||| |
|
|
| T |
15292752 |
cggcagttaactgctggcggtttccccaacggtagttaactatcgctggaggcttttt |
15292809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University