View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17463_low_4 (Length: 564)
Name: NF17463_low_4
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 230 - 548
Target Start/End: Original strand, 37733223 - 37733541
Alignment:
| Q |
230 |
ttatcttatagtcccttaccaatgctgctcctaacaatggaacagtagcaccaaatgaaaatgcaattgctgatgcaatagcagcttgaaaaggatttgg |
329 |
Q |
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| T |
37733223 |
ttatcttatagtcccttaccaatgctgctcctaacaatggaacagtagcaccaaatgaaaatgcaattgctgatgcaatagcagcttgaaaaggatttgg |
37733322 |
T |
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| Q |
330 |
tagtagctgcttttccttttcaacaaaagtgctgttgattttgttctctcttttcatttgagctaccattatgtcaaactgagtgtacactgatacaaac |
429 |
Q |
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| T |
37733323 |
tagtagctgcttttcctcttcaacaaaagtgctgttgattttgttctctcttttcatttgagctaccattatgtcaaactgagtgtacactgatacaaac |
37733422 |
T |
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| Q |
430 |
tctccaattcccatactacatgctcctgcaattagtcctgcaaatccagctagaagcattgttttgatgtcttcatgcacagctccaacacctaatatca |
529 |
Q |
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| T |
37733423 |
tctccaattcccatactacatgctcctgcaattagtcctgcaaatccagctagaagcattgttttgatgtcttcatgcacagctccaacacctaatatca |
37733522 |
T |
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| Q |
530 |
atgatgttattgataccaa |
548 |
Q |
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| T |
37733523 |
atgatgttattgataccaa |
37733541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 37733038 - 37733167
Alignment:
| Q |
45 |
taaccacattcaaagtgaactatagccaactaatttggttaagccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagacatt |
144 |
Q |
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| T |
37733038 |
taaccacattcaaagtgaactatagccaacgaatttggttaagccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagacatt |
37733137 |
T |
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| Q |
145 |
ttcactgatgttttaccaagtattgctcct |
174 |
Q |
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| T |
37733138 |
ttcactgatgttttaccaagtattgctcct |
37733167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 37751970 - 37752035
Alignment:
| Q |
76 |
aatttggttaagccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagac |
141 |
Q |
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| T |
37751970 |
aatttggtgaaaccaaaagtaatggccatagccatccaacctccaataagaactctaacacaagac |
37752035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 37742736 - 37742683
Alignment:
| Q |
88 |
ccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagac |
141 |
Q |
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| T |
37742736 |
ccaaaagtaatggccatagccatccaacctccaataagaactctaacacaagac |
37742683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 37749806 - 37749753
Alignment:
| Q |
88 |
ccaaaggtaatagccatagccatccaacctccaaccaccactctaacacaagac |
141 |
Q |
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| T |
37749806 |
ccaaaagtaatggccatagccatccaacctccaataagaactctaacacaagac |
37749753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 37758055 - 37758116
Alignment:
| Q |
412 |
gtgtacactgatacaaactctccaattcccatactacatgctcctgcaattagtcctgcaaa |
473 |
Q |
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| T |
37758055 |
gtgtacacagaaacaaattctcctattgccataccacatgctcctgcaattaatcccgcaaa |
37758116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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