View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17463_low_5 (Length: 563)
Name: NF17463_low_5
Description: NF17463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17463_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 94 - 541
Target Start/End: Original strand, 5026995 - 5027442
Alignment:
| Q |
94 |
ttagacccaagaaacgaagaatatgtttctcattcacaacttatgcaaacaatctcatacaaaacctcaaatcctccaacattattatcgaacaaggact |
193 |
Q |
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| T |
5026995 |
ttagacccaagaaacgaagaatatgtttctcattcacaacatatgcaaacgatctcatacaaaacctcaaatcctctaacattattatcgaacaaggact |
5027094 |
T |
|
| Q |
194 |
caccgaatcagaatttcaacatctcgaatcaaaattcaaccttaaattcccacctgatcttcatgctattctccaacaaggtcttccagtttcaccgggt |
293 |
Q |
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| T |
5027095 |
caccgaatcagaatttcaacatctcgaatcaaaattcaaccttaaattcccacctgatcttcatgctattctccaacaaggtcttccagtgtcaccgggt |
5027194 |
T |
|
| Q |
294 |
tttcctaattggcgttcatcatctcatcaacagcttcaaattcttctcaacattccattctcttccattatccgccgcgttaaaaataatagtttctggc |
393 |
Q |
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| T |
5027195 |
tttcctaattggcgttcatcatctcatcaacagcttcaaattcttctcaacattccagtctcttccattctccgccgcgttaaaaataatagtttctggc |
5027294 |
T |
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| Q |
394 |
atccttcatggggtccaatcccgaaagataagctaaccgcggcgcagaggattttggactctgcgccgcagttagttccgatctttcggcattgttatat |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
5027295 |
atccttcatggggtccaatcccgaaagataagctaaccgcggcgcagaggattttggaccctgcaccgcagttagttccgatctttcggcattgttatat |
5027394 |
T |
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| Q |
494 |
acctatgaatccgtttgttactgggaatccggttttttacgttgatca |
541 |
Q |
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| T |
5027395 |
acctatgaatccgtttgttactgggaatccggtattttacgttgatca |
5027442 |
T |
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