View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17464_high_1 (Length: 581)
Name: NF17464_high_1
Description: NF17464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17464_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 53365123 - 53365698
Alignment:
| Q |
1 |
ttagaaaggaggttggtaatgtattatgatgtcggcttccacacactacacatgtgggagtgaattcattcatcttaatcttataataataacaaccact |
100 |
Q |
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| T |
53365123 |
ttagaaaggaggttggtaatgtgttatgatgtcggcttccacacactacacatgtgggagtgaattcattcatcttaatcttataataataacaaccact |
53365222 |
T |
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| Q |
101 |
aaatacaagaatgtgacactgattggttggttgcccttgactgactcatttttccagcacaggcagatatatcaaacacccatttgaccttttatcaatc |
200 |
Q |
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| T |
53365223 |
aaatacaagaatgtgacactgattggttggttgcccttgactgactcatttttccagcacatgcagatatatcaaacacccatttgaccttttatcaatc |
53365322 |
T |
|
| Q |
201 |
accatcagaacaaggaaagccctgcaaaaccacaacattcattcatactcatccatttatttattgccttcaaataaaagtctaggttctaaaaagaatg |
300 |
Q |
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| T |
53365323 |
accatcagaacaaggaaagccctgcaaaaccacaacattcattcatactcatccatttatttattgccttcaaataaaagtctaggttctaaaaagaatg |
53365422 |
T |
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| Q |
301 |
atttcattgtccaatttatttaagtttcctacatcctagattatataatatcaaaacaatattttttaagttgctgnnnnnnnttgaacagattttaatt |
400 |
Q |
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| T |
53365423 |
atttcattgtccaatttatttaagttttctacatcctaga-tatataatatcaaaacaatattttttaagttgctgaaataaattgaacagattttaatt |
53365521 |
T |
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| Q |
401 |
gagattttgactttgcttttgaaaactcaatgtaaatgttttatacatatatactaatttaataagattgtttatcccttaaaaaataataaacaaccat |
500 |
Q |
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| T |
53365522 |
gagattttgactttgcttttgaaaactcaatgtaaatgttttatacatatatactaatttaataagattgtttatcccttaaaaaataataaacaaccat |
53365621 |
T |
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| Q |
501 |
gttgtaagaaaagatatataataagattttcaataatcttcaaacacagatgatgttataaattattgatgatgtcc |
577 |
Q |
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| T |
53365622 |
gttgtaagaaaagatatataataagattttcaataatcttcaaacacagatgatgttataaattatttgtgatgtcc |
53365698 |
T |
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